PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00355.1.g00540.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WOX
Protein Properties Length: 328aa    MW: 34999.9 Da    PI: 9.6342
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00355.1.g00540.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.3e-1995155357
                                   --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                      Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                   +R+t+t+eql++L+el++    r p+ae+++++++ l    +++ ++V++WFqN++a+e++
  Zmw_sc00355.1.g00540.1.am.mk  95 SRWTPTPEQLRILKELYYTcgVRSPTAEQIQRITAMLrqhgKIEGKNVFYWFQNHKARERQ 155
                                   7*****************7669*************************************97 PP
2Wus_type_Homeobox114.16.9e-3794157365
             Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                                    +RWtPtpeQ++iL+ely+ +G+r+P++e+iqrita+L+++Gkie+kNVfyWFQN+kaRerqk+
  Zmw_sc00355.1.g00540.1.am.mk  94 GSRWTPTPEQLRILKELYYtCGVRSPTAEQIQRITAMLRQHGKIEGKNVFYWFQNHKARERQKK 157
                                   68***************9989*****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-1288159IPR009057Homeodomain-like
PROSITE profilePS5007110.20390156IPR001356Homeobox domain
SMARTSM003892.6E-792160IPR001356Homeobox domain
PfamPF000462.6E-1795155IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.8E-795155IPR009057Homeodomain-like
CDDcd000862.07E-796157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0080166Biological Processstomium development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MPLLQLIYFL HESRPCLSLV ILLVLKSSKK RKPPPSPRVL RLNRSSSAYP SITTTAASAS  60
AMQQPKQVMS AGDGVAAANA SARSGGVSVC RPTGSRWTPT PEQLRILKEL YYTCGVRSPT  120
AEQIQRITAM LRQHGKIEGK NVFYWFQNHK ARERQKKRLT NLDVNVPAAD ANHLGVVSLS  180
PAARATSPSS TVGMYTGNGV GASAMQLDAA VDWDNTAMVA TEGCFLQDYM GVQNTGGVHG  240
STGAATSPWA WFSSPDQRTT TRAPETLPLF PTGDVDSCPR PWQGVDASRG GSYCLPDLPC  300
RCIAINTCAL PGCGVMAWSS SGGVSAAR
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor required for the formation and development of tiller buds and panicles (PubMed:25697101). Required for tiller formation and female sterility (PubMed:27194802). Required for the early developmental stages of axillary meristem formation (PubMed:25841039). Plays a role in maintaining the axillary premeristem zone and in promoting the formation of the axillary meristem by promoting OSH1 expression (PubMed:25841039). Does not seem to be involved in maintenance of the shoot apical meristem (SAM) (PubMed:25841039). {ECO:0000269|PubMed:25697101, ECO:0000269|PubMed:25841039, ECO:0000269|PubMed:27194802}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00265DAPTransfer from AT2G17950Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by the cytokinin 6-benzylaminopurine. {ECO:0000269|PubMed:17351053}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022680535.14e-92WUSCHEL-related homeobox 1B
RefseqXP_025826282.13e-92WUSCHEL-related homeobox 1A-like
SwissprotQ7XM135e-63WOX1_ORYSJ; WUSCHEL-related homeobox 1
TrEMBLA0A3L6Q0449e-92A0A3L6Q044_PANMI; Uncharacterized protein
STRINGSi024219m1e-91(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124653136
Publications ? help Back to Top
  1. Lu Z, et al.
    MONOCULM 3, an ortholog of WUSCHEL in rice, is required for tiller bud formation.
    J Genet Genomics, 2015. 42(2): p. 71-8
    [PMID:25697101]
  2. Tanaka W, et al.
    Axillary Meristem Formation in Rice Requires the WUSCHEL Ortholog TILLERS ABSENT1.
    Plant Cell, 2015. 27(4): p. 1173-84
    [PMID:25841039]
  3. Mjomba FM, et al.
    Homeobox Is Pivotal for OsWUS Controlling Tiller Development and Female Fertility in Rice.
    G3 (Bethesda), 2016. 6(7): p. 2013-21
    [PMID:27194802]