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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00355.1.g00080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | SBP | ||||||||
Protein Properties | Length: 387aa MW: 42004.6 Da PI: 7.9058 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 128.9 | 1.9e-40 | 163 | 241 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EE.ETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvl.vsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cq+egC+adls+ak+yhrrhkvCe+hskapvv+ + gl+qrfCqqCsrfh l+efD++k+sCr+rLa+hn+rrrk+++ Zmw_sc00355.1.g00080.1.am.mk 163 RCQAEGCKADLSSAKRYHRRHKVCEHHSKAPVVVtAGGLHQRFCQQCSRFHLLDEFDDAKKSCRKRLADHNRRRRKSKP 241 6******************************98725689*************************************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 9.3E-34 | 158 | 226 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 30.291 | 161 | 239 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.28E-37 | 162 | 242 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 7.6E-31 | 164 | 238 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009554 | Biological Process | megasporogenesis | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MMNIPAAGAN ACNEFAYVSP GAAPPSLLPI MEQESSIQRE QLGYNLEANS LALLPPSTAA 60 AAHQQTTIAA HDILQFYPAA AASSHYLGGG GGNPYSHHFG GSNYQAYYQQ AAQASPEYYF 120 PTLVSSAEEN MASFAATQLG LNLGYRTYFP PRGGYTYGHH PPRCQAEGCK ADLSSAKRYH 180 RRHKVCEHHS KAPVVVTAGG LHQRFCQQCS RFHLLDEFDD AKKSCRKRLA DHNRRRRKSK 240 PTDADAADKK RAQASKAAAG AKDKAGSSSK NNMDIGDGLT TQILGSALLS KEQDQAMDLG 300 EVVKEAVDPK GKASMQQQHA HHHGMSNHSF PFPTSSGSCF PQSQAVSSDN TSNIAQVQEP 360 SLAFHQHHQH SNILQLGQAM FDMDFDH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 5e-27 | 164 | 238 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 233 | 250 | RRRRKSKPTDADAADKKR |
2 | 234 | 239 | RRRKSK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that plays an important role in building the laminar joint between leaf blade and leaf sheath boundary, thereby controlling ligule and auricle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00090 | SELEX | Transfer from AT1G02065 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824698.1 | 0.0 | protein LIGULELESS 1-like | ||||
Swissprot | Q01KM7 | 0.0 | SPL8_ORYSI; Squamosa promoter-binding-like protein 8 | ||||
TrEMBL | A0A0A9DKR3 | 0.0 | A0A0A9DKR3_ARUDO; Lg1 | ||||
STRING | Si022315m | 0.0 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6990 | 34 | 52 |