PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00353.1.g00500.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 392aa MW: 42236.5 Da PI: 7.8203 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 47 | 6.5e-15 | 62 | 143 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspk...qCkekwenlnkrykkikegekkrtsessst 78 W++ + aLi+a e+ +l+rg+l+ p+W+ev++++ ++ g++++pk qCk++++ l+k+yk +k+ + + Zmw_sc00353.1.g00500.1.sm.mk 62 WSDGATSALIDAWGERFVALGRGSLRHPQWQEVAEVVsSRDGYSKTPKsdaQCKNRIDTLKKKYKVEKAKHDS-------S 135 *************************************878899988765559**************9998886.......5 PP trihelix 79 cpyfdqle 86 + yf++l+ Zmw_sc00353.1.g00500.1.sm.mk 136 WTYFHRLD 143 ******98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 7.2E-23 | 60 | 145 | No hit | No description |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MDDDAEASPS PSPSPSRSPS PLPVADPVTV ASAPPGHIAV AIPLRKPSPS SGGGSGGRED 60 AWSDGATSAL IDAWGERFVA LGRGSLRHPQ WQEVAEVVSS RDGYSKTPKS DAQCKNRIDT 120 LKKKYKVEKA KHDSSWTYFH RLDELLAPIY KPGSGSSSGA RSAPPMVPPR FSFPQRTRTP 180 LQPPAVAKRR IPSPPTQPSA SSGSSDGFPP EPPSATVANG KKPRVEEPAP ANGAESNNRA 240 QSLRELARAI RRFGEVYELI ESSKREQELR MERERLEAAR ELGDQRVQFF LKMQMELSKA 300 TDGAPSATPM AAATAIDGNG SRRAAMATDV ATSSNHKVRY RSKDSRHPHT AQQPQYQHSQ 360 NNSGAAAPAS GNSGDTENKE DEDMEDEDEE SQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001170546.1 | 1e-154 | uncharacterized protein LOC100384564 | ||||
Swissprot | Q9LJG8 | 8e-35 | ASIL2_ARATH; Trihelix transcription factor ASIL2 | ||||
TrEMBL | A0A0E0K1B1 | 1e-155 | A0A0E0K1B1_ORYPU; Uncharacterized protein | ||||
STRING | Pavir.J27535.1.p | 1e-157 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2404 | 30 | 69 |