PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00350.1.g00370.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 490aa    MW: 53472.1 Da    PI: 8.1382
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00350.1.g00370.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-18257307155
                           AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   ++++GVr ++ +g+++AeIrd +     r  r++lg+f+taeeAak ++ a+ +l+g
  Zmw_sc00350.1.g00370.1.am.mk 257 PRFRGVRKRP-WGKYAAEIRDpW-----RrVRVWLGTFDTAEEAAKVYDSAAVQLRG 307
                                   689*******.**********88.....55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.59E-27257317No hitNo description
PfamPF008471.5E-10257307IPR001471AP2/ERF domain
SMARTSM003807.6E-33258321IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-28258316IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-20258315IPR016177DNA-binding domain
PROSITE profilePS5103223.011258315IPR001471AP2/ERF domain
PRINTSPR003678.2E-10259270IPR001471AP2/ERF domain
PRINTSPR003678.2E-10281297IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MELKSKATTQ TIELLLRPSP RLVLRGGVRA REWETGQLEG AGNRPDPGNQ VCPKAFQFGS  60
GYRSTRRHTR HPKGFQYGSH RLTRSPSTTV TNSKRRRSSE VDATVNALAS RDPPADTWVQ  120
AHASRNQSAA AGRISRSCLR VAYCGVMWTT EDEDMFAAVR RTEHVELVTT QQRPRAAGPG  180
PRTVRVFCDD YDATDSSGDE EDHARRRVKR YVQEVRLDPT VMPAKDSSAV KAAALPSTTT  240
NSARKRNADG RPGSGEPRFR GVRKRPWGKY AAEIRDPWRR VRVWLGTFDT AEEAAKVYDS  300
AAVQLRGRNA TTNFQQASDA THPFPPQPLP AAASKNNAST SSAAASSYDS GEESVSHGAA  360
AAAAAAASPT SVLRSFPPSA VIALAEDVTT ACMKTATITE STGGLFFGCP FSDDGPFGFP  420
PVYTDFDDLL RADFLPPDEP SLSLPASFFS PGDVDEERQQ SSSSAPTDKW QQVDDFFQDI  480
TDLFQIDHQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-18253314971Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967470.14e-95ethylene-responsive transcription factor CRF1
TrEMBLA0A1E5VYG94e-96A0A1E5VYG9_9POAL; Uncharacterized protein
STRINGGRMZM2G142179_P012e-89(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697