PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00347.1.g00020.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 328aa    MW: 35464.3 Da    PI: 7.439
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00347.1.g00020.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.31.3e-154291255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                                  +y+GVr+++ +gr++AeIrdp     +  r +lg+f+tae+Aa a++ a++ ++g
  Zmw_sc00347.1.g00020.1.sm.mk 42 RYRGVRRRP-WGRFAAEIRDPM----SkERRWLGTFDTAEQAACAYDFAARVMRG 91
                                  69*******.**********84....35999*******************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.62E-2641101No hitNo description
SuperFamilySSF541711.31E-2142100IPR016177DNA-binding domain
PROSITE profilePS5103222.6294299IPR001471AP2/ERF domain
SMARTSM003802.8E-3342105IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-2942100IPR001471AP2/ERF domain
PfamPF008474.5E-94291IPR001471AP2/ERF domain
PRINTSPR003673.5E-94354IPR001471AP2/ERF domain
PRINTSPR003673.5E-96581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0009880Biological Processembryonic pattern specification
GO:0048825Biological Processcotyledon development
GO:0051726Biological Processregulation of cell cycle
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDDTAADAHL YGHTHTHNHR SRRSSRTGAV DEDGDVSPKG ARYRGVRRRP WGRFAAEIRD  60
PMSKERRWLG TFDTAEQAAC AYDFAARVMR GNKARTNFPV QATAGCWPWG PSQVAAPDHS  120
LRPFILHNLL MSSSHHGGCR LLQHAALGHA NVASATNRPP PVPPPRPCST ASSPSGTVTT  180
PVGAVTSSVA SPLGAQLDDD DDDDVWGSLL QGDPPGAGLL QDALHDFYPS TRPRGTSRKP  240
GADSIVRART KHDWNEAFRT ASTYGGDDVD EDGDCPMIPQ GLLGDMIQVP SFVDFRGRAV  300
RSPVPRPTDL MDPARTLQPS HACTHGTY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2039105269ATERF1
3gcc_A5e-2039105269ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955046.14e-88ethylene-responsive transcription factor 3
TrEMBLK3YYH59e-87K3YYH5_SETIT; Uncharacterized protein
STRINGSi019328m2e-87(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72633050