PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00343.1.g00400.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 672aa    MW: 72198.1 Da    PI: 8.8485
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00343.1.g00400.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.45.9e-33356413260
                                   --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                                   dDgynWrKYGqK++kgse+prsYY+Ct+++Cp+kkkvers  d++v+ei+Y+g+Hnh+k
  Zmw_sc00343.1.g00400.1.am.mk 356 DDGYNWRKYGQKQMKGSENPRSYYKCTFPDCPTKKKVERSP-DGQVTEIVYKGTHNHPK 413
                                   8****************************************.***************85 PP
2WRKY98.54.2e-31520578159
                                   ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                   ldDgy+WrKYGqK+vkg+++prsYY+Ct agCpv+k+ver+ +d ++v++tY  +Hnh+
  Zmw_sc00343.1.g00400.1.am.mk 520 LDDGYRWRKYGQKVVKGNPNPRSYYKCTAAGCPVRKHVERACHDARAVITTYVAKHNHD 578
                                   59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-28347414IPR003657WRKY domain
SuperFamilySSF1182905.1E-25352414IPR003657WRKY domain
SMARTSM007743.1E-35355413IPR003657WRKY domain
PROSITE profilePS5081123.456356414IPR003657WRKY domain
PfamPF031063.5E-25356412IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.8E-35505580IPR003657WRKY domain
SuperFamilySSF1182905.23E-28512580IPR003657WRKY domain
PROSITE profilePS5081137.275515580IPR003657WRKY domain
SMARTSM007741.5E-34520579IPR003657WRKY domain
PfamPF031061.0E-23521578IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 672 aa     Download sequence    Send to blast
MIPKKPDPNH HLPDTLLRYA SHKLVQSAHC DWGLRCSRAP SMGKNGQRNG SRPPLPPRTE  60
TRTRSGTGHC FDAHVSGLPR SHWRVAVGSG VVFRAPITFD RSTVRDSNVY KRGWESCRRD  120
TPRPALRRPV LPARYSPAVS VSPPSHMTSA PASLGAAVAN SGPVALSFAS NSFGGGSSFL  180
AGGSRFKNMA PVSLPPASPS SRFNAAAAGG FLDSPILLTP SLFPSPTTGA FPSEPFNWMG  240
PPAENLPEVV KEEKRQCFDF TFQTTAAVPV TTTGAAQAES FSQSSMTMAP LGGEGDSYNG  300
EPWSFQQERA MDFNAPFEAP SSGVTTAATQ PADMLGNSGY NAPPCFREQQ SRRSSDDGYN  360
WRKYGQKQMK GSENPRSYYK CTFPDCPTKK KVERSPDGQV TEIVYKGTHN HPKPQGTRRG  420
AASAASYVLG SANDEHSFGA LSGTPVATPE NSSGSFGDDE INGVSSRLIG TDQLLHADDE  480
PDSKKCRRDG SEGEALSVAG NRTVREPRVV VQTLSDIDVL DDGYRWRKYG QKVVKGNPNP  540
RSYYKCTAAG CPVRKHVERA CHDARAVITT YVAKHNHDVP PARGSYRAGL TALQPAASYH  600
QGAGVFGGAS SHGAPMQAAE SGGFAVSGFG NTMGASYPYT TSQQCDATYY TSGTKDEPRD  660
DDLSFFEQQL LF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-32356580877Probable WRKY transcription factor 4
2lex_A5e-32356580877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:26025535). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:19199048, PubMed:26025535). Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (PubMed:15618416, PubMed:19199048, PubMed:26025535). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048, ECO:0000269|PubMed:26025535}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:15618416, PubMed:19199048). Slightly down-regulated by gibberellic acid (GA) (PubMed:15618416). Accumulates in response to jasmonic acid (MeJA) (By similarity). {ECO:0000250|UniProtKB:Q6B6R4, ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:19199048}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004961763.10.0WRKY transcription factor WRKY24
SwissprotQ6IEQ71e-137WRK24_ORYSJ; WRKY transcription factor WRKY24
TrEMBLA0A1E5UYK50.0A0A1E5UYK5_9POAL; Putative WRKY transcription factor 33
STRINGSi021634m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  3. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]
  4. Zhang L, et al.
    Three WRKY transcription factors additively repress abscisic acid and gibberellin signaling in aleurone cells.
    Plant Sci., 2015. 236: p. 214-22
    [PMID:26025535]