PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00341.1.g00250.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 467aa    MW: 50483.9 Da    PI: 8.6495
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00341.1.g00250.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.32.5e-31235291259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+
  Zmw_sc00341.1.g00250.1.sm.mkhc 235 DDGYNWRKYGQKVVKGSDCPRSYYKCTYPNCPVKKKVEHAE-DGQISEIIYKGKHNHH 291
                                     8**************************************99.***************7 PP
2WRKY106.21.6e-33391449159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+H he
  Zmw_sc00341.1.g00250.1.sm.mkhc 391 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFAGCNVRKHIERASSDPKAVITTYEGKHSHE 449
                                     59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.8E-28229293IPR003657WRKY domain
SuperFamilySSF1182903.92E-25232293IPR003657WRKY domain
SMARTSM007741.1E-33234292IPR003657WRKY domain
PROSITE profilePS5081123.032235293IPR003657WRKY domain
PfamPF031063.0E-24235291IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.8E-36377451IPR003657WRKY domain
SuperFamilySSF1182906.8E-29383451IPR003657WRKY domain
PROSITE profilePS5081136.839386451IPR003657WRKY domain
SMARTSM007745.3E-39391450IPR003657WRKY domain
PfamPF031061.0E-25392448IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MSARPPPPPR PRLALPPRSN SESLFTGAGD ASPGPLTLAS ALFSSDTGGG TSSSTGTGAT  60
SFTELLIGSL APPPPSLAPQ QQQQQHEAER GRGGVARAGP ALSVAPPASS ASAASVFTVP  120
PGLSPSGLFD SPGLLFSPAM GGFGMSHQQA LAQVTAQASH SPQRMFDYMK QQSFSAAATS  180
SEAHQHMNSA ANVARTSEMR MVTENNENAS FQSAEASQRY QVNAPVNAVV DKPADDGYNW  240
RKYGQKVVKG SDCPRSYYKC TYPNCPVKKK VEHAEDGQIS EIIYKGKHNH HRPPNKRGKD  300
GNPTAAEQIE QSNDATSGLS GAKRDPEAMY GMSEQLSGLS EGDDMEDGES RPQEVDDGDN  360
ENKRRTLQIS SQRTLSEPKI IVQTTSEVDL LDDGYRWRKY GQKVVKGNPH PRSYYKCTFA  420
GCNVRKHIER ASSDPKAVIT TYEGKHSHEP PIVRRQQSNL NQWRRLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-38235451877Probable WRKY transcription factor 4
2lex_A5e-38235451877Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001147897.20.0uncharacterized protein LOC100281507
TrEMBLA0A060D6R50.0A0A060D6R5_MAIZE; WRKY transcription factor (Fragment)
TrEMBLB6SYC50.0B6SYC5_MAIZE; SPF1-like DNA-binding protein
STRINGGRMZM2G076657_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122