PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00338.1.g00100.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 422aa    MW: 45425.8 Da    PI: 7.5983
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00338.1.g00100.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.21.5e-16226275255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr +k +g+Wv eIr p   g ++r++lg+f +ae+Aa a++ a+++l+g
  Zmw_sc00338.1.g00100.1.am.mk 226 QYRGVRKRK-WGKWVTEIRQP---GTKTRIWLGSFESAEMAAVAHDVAALRLRG 275
                                   69****999.**********8...325*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.6E-36226289IPR001471AP2/ERF domain
PROSITE profilePS5103223.406226283IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-30226284IPR001471AP2/ERF domain
SuperFamilySSF541712.62E-20226284IPR016177DNA-binding domain
PRINTSPR003672.3E-9227238IPR001471AP2/ERF domain
PfamPF008479.3E-11227275IPR001471AP2/ERF domain
CDDcd000189.46E-30227283No hitNo description
PRINTSPR003672.3E-9249265IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MLDDYRVVWH HGETPHEIIG KGFVVVATAG AIITGFWPCT VRLYVPVLCE RRDGQCRDDS  60
HAWESIVAIA YSPASCTQHD WEGTLARYGP ATFRTRACIR TRGVLLAVGL TRIHAPFFPD  120
LDLPPSTDPS SKISHSDHHN AMAAGAVSET DLRSRCSSIA LLHGCPLLLA PHASSLALGA  180
LRMHSLLKYS SLRVVSMDHM AATDLLLLPA TSTIAGGGGG GSGQQQYRGV RKRKWGKWVT  240
EIRQPGTKTR IWLGSFESAE MAAVAHDVAA LRLRGRDAQL NFPGSAGPGR AGELAGSDEE  300
FDLDLGSPRL WAEMAEAMLL DPPRWDTGVS DAEVAQCWSH GSLRTGSARP FLLLPVLFFL  360
PPTPFSPLSL SWPSVRGGDN IGESATPFAT PSLGSPATST NQVCPPLLVP FFSRRNGVPT  420
NL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-15225283463ATERF1
3gcc_A2e-15225283463ATERF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389