PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00338.1.g00040.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

M-type_MADS

Protein Properties

Length: 127aa MW: 14819.2 Da PI: 10.0785

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00338.1.g00040.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	78.4	5.2e-25	10	58	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr g+lKKA ELS+LCda++ vi+fs++gk+ye + Zmw_sc00338.1.g00040.1.sm.mk 10 RIENPVHRQVTFCKRRMGMLKKARELSILCDADIGVIVFSPNGKIYELA 58 8*********************************************965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.058	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.0E-35	1	60	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	5.76E-28	1	77	IPR002100	Transcription factor, MADS-box
CDD	cd00265	9.31E-35	2	73	No hit	No description
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-26	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.0E-24	10	56	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.8E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MARGKVQMRR IENPVHRQVT FCKRRMGMLK KARELSILCD ADIGVIVFSP NGKIYELATN 60 GNMQGLIERY RSTYTEKQGE SSEQDKSQFR IQIMYKEIEM LRSKEGILKA SNDILQERYQ 120 LGLSEIR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	1e-15	1	85	1	83	MEF2 CHIMERA
6byy_B	1e-15	1	85	1	83	MEF2 CHIMERA
6byy_C	1e-15	1	85	1	83	MEF2 CHIMERA
6byy_D	1e-15	1	85	1	83	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.
UniProt	Probable transcription factor.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020194477.1	1e-56	MADS-box transcription factor 26-like
Refseq	XP_020194478.1	1e-56	MADS-box transcription factor 26-like
Swissprot	A2YQK9	1e-42	MAD26_ORYSI; MADS-box transcription factor 26
Swissprot	Q0J8G8	1e-42	MAD26_ORYSJ; MADS-box transcription factor 26
TrEMBL	A0A0E0P9M7	7e-61	A0A0E0P9M7_ORYRU; Uncharacterized protein
STRING	ORUFI04G15040.1	1e-61	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1491	36	112

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Lee S, et al. Further characterization of a rice AGL12 group MADS-box gene, OsMADS26. Plant Physiol., 2008. 147(1): p. 156-68 [PMID:18354041] Khong GN, et al. OsMADS26 Negatively Regulates Resistance to Pathogens and Drought Tolerance in Rice. Plant Physiol., 2015. 169(4): p. 2935-49 [PMID:26424158]