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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc00322.1.g00180.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | bHLH | ||||||||
| Protein Properties | Length: 279aa MW: 29905.5 Da PI: 10.0365 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 41.5 | 2.5e-13 | 21 | 72 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
r+h+e+Er+RR+riN +++Lr+l+P+as+ ++Ka+ L ++v+++++L
Zmw_sc00322.1.g00180.1.am.mk 21 RSHSEAERKRRQRINAHLATLRTLVPSASRLVVAQMDKAALLGEVVRHVREL 72
58*************************999*******************998 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 3.66E-12 | 15 | 77 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 15.027 | 18 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.3E-13 | 21 | 75 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.24E-11 | 21 | 75 | No hit | No description |
| Pfam | PF00010 | 5.6E-11 | 21 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 5.1E-11 | 24 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:3.30.70.260 | 8.4E-5 | 142 | 190 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 279 aa Download sequence Send to blast |
MATEGECSAP AAEERKVPPV RSHSEAERKR RQRINAHLAT LRTLVPSASR LVVAQMDKAA 60 LLGEVVRHVR ELRAKASDAT EGVLGGIPGK SDEVGVVEEH DHHHHWRPDH DHHHCYGPGS 120 GHGADEDGGV DRRRPRRVRA WVCCADRPGL MSDIGRAVRS ASARPVRAEI ATVGGRTRSV 180 LELDVCDADD DDGRAVVLST LRASLRNVLL DREVHLAAAG AAEGYKRPRF SAQIGKSGGG 240 RSIGTSSCGE AQRRRRGPSC GGARAAQRGK ARAAAVQSE |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 26 | 31 | ERKRRQ |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_025822447.1 | 5e-83 | transcription factor AIG1-like | ||||
| TrEMBL | A0A2T8IHC4 | 1e-81 | A0A2T8IHC4_9POAL; Uncharacterized protein | ||||
| STRING | OMERI09G10040.1 | 2e-77 | (Oryza meridionalis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP4114 | 35 | 69 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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