PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc00319.1.g00140.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 466aa MW: 50084.6 Da PI: 5.3461

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00319.1.g00140.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	122.2	2.7e-38	136	235	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 aCaaCk++rrkC++dC+lapyfpa+q+++f n+h+lFG+sn+lk+l+ l+++ +am++l+++Ae+r++dPv G++++il Zmw_sc00319.1.g00140.1.am.mk 136 ACAACKYQRRKCNSDCPLAPYFPADQQRRFLNAHRLFGVSNILKTLRGLRPDLCAEAMNTLIFQAEMRVQDPVGGCYRLIL 216 7****************************************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 l++q+e ++aela+++++ Zmw_sc00319.1.g00140.1.am.mk 217 GLERQIEIERAELAAVHHH 235 **************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.178	135	236	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.3E-36	136	233	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 466 aa Download sequence Send to blast
MPAWIPSIFS LAKNGASKRA WRWINGADSP LALSCSYSYD DGAGAASPSP HLARASPLPA 60 PRPARAPRSA TMTSASSSTG AAAAHAPHLH ISTNPTTALP SSSYCNKLSS GKASGSHSPR 120 GTGGSGSGGS GSANQACAAC KYQRRKCNSD CPLAPYFPAD QQRRFLNAHR LFGVSNILKT 180 LRGLRPDLCA EAMNTLIFQA EMRVQDPVGG CYRLILGLER QIEIERAELA AVHHHLALCR 240 QAAAMPPKPG DFDVTSSNQA PLLLNADQDV VVDALYSNHH HEVLQKTEGH PHEDHQGHSP 300 QQHGELFDYF YYDTTSAVDD GSSKPAALAI NVDAIPEFGY GEDQKLDINV HDELATGQQQ 360 QQLLDVNFHL DHNDYEMKAA PLLVDVFDMR QQGVDVNADD IDVKAVVDVN ADINIDINAV 420 GANAEVDLNE ELQENGTYNN IATCEAVQCS VEPSQCKPEG LAFYAL

Sequence ? help Back to Top

Protein Sequence Length: 466 aa Download sequence Send to blast

MPAWIPSIFS LAKNGASKRA WRWINGADSP LALSCSYSYD DGAGAASPSP HLARASPLPA  60
PRPARAPRSA TMTSASSSTG AAAAHAPHLH ISTNPTTALP SSSYCNKLSS GKASGSHSPR  120
GTGGSGSGGS GSANQACAAC KYQRRKCNSD CPLAPYFPAD QQRRFLNAHR LFGVSNILKT  180
LRGLRPDLCA EAMNTLIFQA EMRVQDPVGG CYRLILGLER QIEIERAELA AVHHHLALCR  240
QAAAMPPKPG DFDVTSSNQA PLLLNADQDV VVDALYSNHH HEVLQKTEGH PHEDHQGHSP  300
QQHGELFDYF YYDTTSAVDD GSSKPAALAI NVDAIPEFGY GEDQKLDINV HDELATGQQQ  360
QQLLDVNFHL DHNDYEMKAA PLLVDVFDMR QQGVDVNADD IDVKAVVDVN ADINIDINAV  420
GANAEVDLNE ELQENGTYNN IATCEAVQCS VEPSQCKPEG LAFYAL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-22	133	236	8	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-22	133	236	8	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025820222.1	1e-114	uncharacterized protein LOC112896465
TrEMBL	A0A1E5VM40	1e-118	A0A1E5VM40_9POAL; LOB domain-containing protein 22
STRING	Sb07g019940.1	1e-111	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5228	34	61