PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00318.1.g00140.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 329aa    MW: 34165.7 Da    PI: 8.7316
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00318.1.g00140.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.64.1e-20123171355
                           AP2   3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                   y+GVr+++ +g+W+AeIrdp+    + +r++lg+f tae+Aa+a++a +++l+g
  Zmw_sc00318.1.g00140.1.am.mk 123 YRGVRRRP-WGKWAAEIRDPK----KaARVWLGTFATAEDAARAYDAVALRLRG 171
                                   9*******.**********94....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-22122180IPR016177DNA-binding domain
SMARTSM003801.4E-36122185IPR001471AP2/ERF domain
PROSITE profilePS5103225.014122179IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-32122180IPR001471AP2/ERF domain
PfamPF008472.1E-13122171IPR001471AP2/ERF domain
PRINTSPR003672.1E-11123134IPR001471AP2/ERF domain
CDDcd000182.41E-26130181No hitNo description
PRINTSPR003672.1E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MWTPPFLVPA PATLSEDPEE AAIVAALTQV LAGGRSTTTT PMPPASLCPT TAMVCGPWHV  60
GQAACQGEPS ASASVGQVSV QDRTEPSQDL VMPASNQAPA TPTCPKETEP GAAVATAPIR  120
RNYRGVRRRP WGKWAAEIRD PKKAARVWLG TFATAEDAAR AYDAVALRLR GSRAKLNFPE  180
DTASSRRRPP APVGSRQPSS SACDRVAGRC LSCPEVVHHR RGAADDFTGC SNGRFLSSWS  240
IGGQASLSPV CSAAPGAPLL SGSQGMGINS LVTVEQPVAP APSTPDAAHP AGTAPSTACF  300
KILTTLELAP PPTSPDPNRP VVRPPPKIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-23121179463ATERF1
3gcc_A1e-23121179463ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821609.14e-52ethylene-responsive transcription factor ERF095-like
TrEMBLA0A2S3GQ773e-57A0A2S3GQ77_9POAL; Uncharacterized protein
TrEMBLA0A2T7F7G84e-57A0A2T7F7G8_9POAL; Uncharacterized protein
STRINGSi019270m2e-56(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP150381120