PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00317.1.g00230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 534aa MW: 57435.3 Da PI: 9.9052 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 43.9 | 6.3e-14 | 7 | 58 | 34 | 87 |
trihelix 34 vskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 v++k++e+g++rs+k+Ckek+en++k++k++ke++ +r ++ +t+++f+qlea Zmw_sc00317.1.g00230.1.sm.mk 7 VGRKLAEQGYNRSAKKCKEKFENVHKYHKRTKESRAGR--NAGKTYRFFTQLEA 58 7899********************************98..45567*******85 PP | |||||||
2 | trihelix | 109.4 | 2.2e-34 | 354 | 439 | 1 | 87 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 rW+k ev+aLi++r+++++r+++ k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy Zmw_sc00317.1.g00230.1.sm.mk 354 RWPKAEVHALIQLRSNLDTRYQEVGPKGPLWEEISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPY 433 8*********************************************************************8.99******* PP trihelix 82 fdqlea 87 f+qlea Zmw_sc00317.1.g00230.1.sm.mk 434 FHQLEA 439 ****85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.8E-9 | 8 | 59 | No hit | No description |
SMART | SM00717 | 0.0092 | 351 | 413 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-4 | 352 | 410 | IPR009057 | Homeodomain-like |
CDD | cd12203 | 6.78E-30 | 353 | 418 | No hit | No description |
PROSITE profile | PS50090 | 7.155 | 353 | 411 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.9E-23 | 353 | 440 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MAIDVVVGRK LAEQGYNRSA KKCKEKFENV HKYHKRTKES RAGRNAGKTY RFFTQLEALH 60 HATGSPASAA PSPVTSFAPP STAVGVSGPL PMWAPAEPPP SVSAGLGGVG MPTMGNMSFS 120 TSNTEDYSDD EDSDDEGTQE LGEGADERGK RKRLSEGSAA VGGSGRRKMM RFFEGMMKQV 180 MERQEAMHQR FLEAIEKREQ ERMIREEAWR RQEMARLARE QEILAQERAM AASRDAAVLS 240 FIQKVTGQTI PMPSIAAPAI NIMPPPSSHP PPQPHPTAAA SASPAPTPSQ PPALQTPPPQ 300 PQPSPQSQKS QQPTTPHAPP TQQQSSDFVM TPADAPHADT SGHDGSGGGA TSSRWPKAEV 360 HALIQLRSNL DTRYQEVGPK GPLWEEISAG MRRLGYNRNA KRCKEKWENI NKYFKKVKES 420 NKKRPEDSKT CPYFHQLEAL YRNKALSSSS AGAAMHAHAS SAPQEAVTVT AATPICQTPP 480 PPPPPQPSQQ SSQHAAKSGH GNGGSVASEH GGSGSGSMQM QTTNGSVAAA KKVS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794485.1 | 0.0 | trihelix transcription factor GTL1-like isoform X2 | ||||
TrEMBL | A0A1D6KQT8 | 0.0 | A0A1D6KQT8_MAIZE; Trihelix transcription factor GT-2 | ||||
STRING | Sb01g017120.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP606 | 38 | 175 |