PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00317.1.g00230.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 534aa    MW: 57435.3 Da    PI: 9.9052
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00317.1.g00230.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.96.3e-147583487
                      trihelix 34 vskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                                  v++k++e+g++rs+k+Ckek+en++k++k++ke++ +r  ++ +t+++f+qlea
  Zmw_sc00317.1.g00230.1.sm.mk  7 VGRKLAEQGYNRSAKKCKEKFENVHKYHKRTKESRAGR--NAGKTYRFFTQLEA 58
                                  7899********************************98..45567*******85 PP

2trihelix109.42.2e-34354439187
                      trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                                   rW+k ev+aLi++r+++++r+++   k+plWee+s+ mr+ g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpy
  Zmw_sc00317.1.g00230.1.sm.mk 354 RWPKAEVHALIQLRSNLDTRYQEVGPKGPLWEEISAGMRRLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPY 433
                                   8*********************************************************************8.99******* PP

                      trihelix  82 fdqlea 87 
                                   f+qlea
  Zmw_sc00317.1.g00230.1.sm.mk 434 FHQLEA 439
                                   ****85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.8E-9859No hitNo description
SMARTSM007170.0092351413IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-4352410IPR009057Homeodomain-like
CDDcd122036.78E-30353418No hitNo description
PROSITE profilePS500907.155353411IPR017877Myb-like domain
PfamPF138371.9E-23353440No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 534 aa     Download sequence    Send to blast
MAIDVVVGRK LAEQGYNRSA KKCKEKFENV HKYHKRTKES RAGRNAGKTY RFFTQLEALH  60
HATGSPASAA PSPVTSFAPP STAVGVSGPL PMWAPAEPPP SVSAGLGGVG MPTMGNMSFS  120
TSNTEDYSDD EDSDDEGTQE LGEGADERGK RKRLSEGSAA VGGSGRRKMM RFFEGMMKQV  180
MERQEAMHQR FLEAIEKREQ ERMIREEAWR RQEMARLARE QEILAQERAM AASRDAAVLS  240
FIQKVTGQTI PMPSIAAPAI NIMPPPSSHP PPQPHPTAAA SASPAPTPSQ PPALQTPPPQ  300
PQPSPQSQKS QQPTTPHAPP TQQQSSDFVM TPADAPHADT SGHDGSGGGA TSSRWPKAEV  360
HALIQLRSNL DTRYQEVGPK GPLWEEISAG MRRLGYNRNA KRCKEKWENI NKYFKKVKES  420
NKKRPEDSKT CPYFHQLEAL YRNKALSSSS AGAAMHAHAS SAPQEAVTVT AATPICQTPP  480
PPPPPQPSQQ SSQHAAKSGH GNGGSVASEH GGSGSGSMQM QTTNGSVAAA KKVS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794485.10.0trihelix transcription factor GTL1-like isoform X2
TrEMBLA0A1D6KQT80.0A0A1D6KQT8_MAIZE; Trihelix transcription factor GT-2
STRINGSb01g017120.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60638175