PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00316.1.g00100.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

ERF

Protein Properties

Length: 281aa MW: 30797.8 Da PI: 8.8791

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00316.1.g00100.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	60	5.7e-19	108	157	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+++tae+Aa a++ a+ +l+g Zmw_sc00316.1.g00100.1.am.mk 108 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTYDTAEQAALAYDGAAFRLRG 157 59****9.******955...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	9.75E-30	107	167	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.0E-31	108	166	IPR001471	AP2/ERF domain
SMART	SM00380	3.3E-36	108	171	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.261	108	165	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	5.75E-22	108	166	IPR016177	DNA-binding domain
Pfam	PF00847	1.4E-13	109	157	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.9E-11	109	120	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.9E-11	131	147	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
MDHQWRRLHT AEEATTSKSL LASPLPIGTM EYRVLIHALA NPAPATPAAP FMVDTKQSPA 60 MVHGSRNYHL ITPAQAAHWH RPDWRHHGPA PRVMKRYCYG LTLPKAKLYR GVRQRHWGKW 120 VAEIRLPRNR TRLWLGTYDT AEQAALAYDG AAFRLRGDAA RLNFPELRCD GRHLAPPLHP 180 SVDAKLHAAT SAPPAPAASP PQPENGDNQG SCCDSVASTT TTTTAADVAE VSSTGSTSSG 240 LNKPLPEMKQ LDFSGAPWDE ADGVALRKYP SLEIDWDAIL S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	6e-20	105	170	2	67	ATERF1
3gcc_A	6e-20	105	170	2	67	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004983222.1	1e-116	ethylene-responsive transcription factor RAP2-13
Swissprot	Q8H1E4	2e-47	RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4
TrEMBL	A0A1E5UNC7	1e-121	A0A1E5UNC7_9POAL; Ethylene-responsive transcription factor RAP2-13
STRING	Si036893m	1e-115	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP382	35	203

Publications ? help Back to Top
Pati A,Vasquez-Robinet C,Heath LS,Grene R,Murali TM XcisClique: analysis of regulatory bicliques. BMC Bioinformatics, 2006. 7: p. 218 [PMID:16630346] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Iwase A, et al. WIND1-based acquisition of regeneration competency in Arabidopsis and rapeseed. J. Plant Res., 2015. 128(3): p. 389-97 [PMID:25810222] Ikeuchi M, et al. PRC2 represses dedifferentiation of mature somatic cells in Arabidopsis. Nat Plants, 2015. 1: p. 15089 [PMID:27250255] Iwase A, et al. WIND1 Promotes Shoot Regeneration through Transcriptional Activation of ENHANCER OF SHOOT REGENERATION1 in Arabidopsis. Plant Cell, 2017. 29(1): p. 54-69 [PMID:28011694]