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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc00313.1.g00340.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | bHLH | ||||||||
| Protein Properties | Length: 315aa MW: 32655.7 Da PI: 7.8975 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 27.5 | 5.7e-09 | 234 | 275 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ RR+ri +++ L++l+P+ +K++ +++LekA+ Y+k Lq
Zmw_sc00313.1.g00340.1.am.mk 234 AKVRRERIAEKLKILQDLVPNG-----TKVDLVTMLEKAITYVKFLQ 275
589*****************97.....8******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 14.272 | 225 | 274 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 7.8E-12 | 226 | 283 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 2.36E-12 | 227 | 286 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 6.57E-11 | 227 | 279 | No hit | No description |
| SMART | SM00353 | 2.7E-10 | 231 | 280 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 5.9E-6 | 235 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 315 aa Download sequence Send to blast |
MWAPVCRGGS LARRGLITAS KRDTEAAVAP RAPQLRPVMY DDEPSSMSLE LFGYQHGVVV 60 DGDHDVDSGA ALPAGGLQLA FDDNFKGGGG CDPADYYSWA SYGGGGSGAS SSSSSSVLSF 120 EKASNGGRHL AAYSTGAGGG DDCAIWMDAA AAGMVDHPAA CNFGFVSPGG SADHAGREIQ 180 ELGSVQPQAK AAQKRARPVG EVQAAAGKKQ CGGSRKTKAK AAAPPTKDPQ SVAAKVRRER 240 IAEKLKILQD LVPNGTKVDL VTMLEKAITY VKFLQLQVKV LAADEFWPAQ GGKAPELSQV 300 KDALDAILAS QHSNK |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002455315.1 | 1e-118 | transcription factor bHLH69 | ||||
| TrEMBL | A0A1E5W954 | 1e-122 | A0A1E5W954_9POAL; Transcription factor bHLH83 | ||||
| STRING | Sb03g008290.1 | 1e-118 | (Sorghum bicolor) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP1412 | 38 | 117 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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