PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00310.1.g00510.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 328aa    MW: 35390.5 Da    PI: 6.9683
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00310.1.g00510.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.8e-20160209255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++a+ +l+g
  Zmw_sc00310.1.g00510.1.am.mk 160 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDKAAFRLRG 209
                                   59******9.**********965...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.44E-32159217No hitNo description
Gene3DG3DSA:3.30.730.101.4E-32160218IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-22160217IPR016177DNA-binding domain
PROSITE profilePS5103223.117160217IPR001471AP2/ERF domain
SMARTSM003802.2E-37160223IPR001471AP2/ERF domain
PfamPF008471.8E-13161209IPR001471AP2/ERF domain
PRINTSPR003675.5E-11161172IPR001471AP2/ERF domain
PRINTSPR003675.5E-11183199IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MAAAIDMYNT SIHQIASASD QELMKALEPF IPSASSSSSS SPYHYYSSPS SSVTQDSYMP  60
TPSSYTSLAT PPLPSAATTT SSFSQLPPLY SSPYAAPAAP SITRPMGLTH LGPSQIQQIQ  120
AQFLLQQQQQ RGLHAAFLGP RAQPMKQSGS SSLGAAQSKL YRGVRQRHWG KWVAEIRLPK  180
NRTRLWLGTF DTAEDAALAY DKAAFRLRGD MARLNFPSLR RGGAHLAGPL HASVDAKLTA  240
IYQSLTSSSK NGSPSDSAAS PPDSPKCSAS TEEEEESVSV GSPPSPTLAP PVPEMAKLDF  300
TEAPWDETEA FHLRKYPSWE IDWDSILS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-22156217163ATERF1
3gcc_A2e-22156217163ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001183842.11e-156putative AP2/EREBP transcription factor superfamily protein
TrEMBLC4JBG61e-155C4JBG6_MAIZE; Ethylene-responsive transcription factor ERF056
TrEMBLK4JFI71e-155K4JFI7_MAIZE; AP2-EREBP-type transcription factor (Fragment)
STRINGGRMZM2G029323_P011e-155(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203