PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00309.1.g00360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 358aa MW: 38772.4 Da PI: 6.0714 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 95.8 | 3e-30 | 162 | 220 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp++++ tY+geHnh Zmw_sc00309.1.g00360.1.sm.mkhc 162 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERCRTDPNTFILTYTGEHNHA 220 79*************************998****************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-30 | 149 | 222 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.833 | 156 | 222 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.67E-26 | 160 | 222 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.8E-36 | 161 | 221 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.2E-25 | 163 | 219 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 358 aa Download sequence Send to blast |
MEEERFFNNW DLDAVVRLAC RRRLSPPPMQ VNDPFDAFPP PPPQQAPPPV PSSANEWRFP 60 DLRAGGGQDG GELLRALLAA QPPVLPPLPT PQPPPPQKQQ QLQPVVVAPA EVPAPARAAP 120 ASAPARAQPS GRQVPGAVPR SKRRKNQVKK VVRRVPADGS SSDVWAWRKY GQKPIKGSPY 180 PRGYYRCSSS KGCAARKQVE RCRTDPNTFI LTYTGEHNHA APTHRNSLAG TTRHKLPSTA 240 SPPPPSVVVG SSESRHQQQT SPSPPSTPAG LSPTTPLRTP SMEEDEDELL VEDMEMAGED 300 ELLFLSGDDY SAAPMEPVSS LFDVVDEPFL GSPWATAATA GSPAKEVDDD PTQEDERN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-19 | 145 | 223 | 2 | 80 | Disease resistance protein RRS1 |
5w3x_D | 2e-19 | 145 | 223 | 2 | 80 | Disease resistance protein RRS1 |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001130964.1 | 1e-138 | uncharacterized protein LOC100192069 | ||||
TrEMBL | A0A1D6QP27 | 1e-137 | A0A1D6QP27_MAIZE; WRKY transcription factor 22 | ||||
STRING | GRMZM2G038158_P01 | 1e-137 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5358 | 33 | 61 |