PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00299.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 150aa    MW: 16294.9 Da    PI: 4.3768
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00299.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-181968255
                           AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                                  +y+GVr +k +g+Wv+eIr+p   gk++r++lg+f ++e+Aa a++ a+++l+g
  Zmw_sc00299.1.g00050.1.sm.mk 19 QYRGVRKRK-WGKWVSEIREP---GKKTRIWLGSFESPEMAAVAHDVAALRLRG 68
                                  69****999.**********8...557*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.16E-251969No hitNo description
Gene3DG3DSA:3.30.730.101.5E-261970IPR001471AP2/ERF domain
PROSITE profilePS5103220.7841982IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-191970IPR016177DNA-binding domain
SMARTSM003802.6E-271982IPR001471AP2/ERF domain
PRINTSPR003671.3E-92031IPR001471AP2/ERF domain
PfamPF008474.7E-122068IPR001471AP2/ERF domain
PRINTSPR003671.3E-94258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MAMVLDNNVA AGELTAAGQY RGVRKRKWGK WVSEIREPGK KTRIWLGSFE SPEMAAVAHD  60
VAALRLRGRX XXXXXCGGAG AEQLLAGVAW DDVLLCGGAA DDLAADQSSP SMWAELAEAM  120
LMAPPVWEGS TADNDDWGQS SLWDFPVWNY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-141968252ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A7e-141968555ATERF1
3gcc_A7e-141968555ATERF1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828349.16e-51ethylene-responsive transcription factor ERF022
TrEMBLA0A1E5VJX26e-50A0A1E5VJX2_9POAL; Uncharacterized protein
STRINGPavir.J22217.1.p1e-51(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22443389