PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00287.1.g00110.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB_related
Protein Properties Length: 284aa    MW: 31552.5 Da    PI: 9.0462
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00287.1.g00110.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.81.3e-09142185347
                                   SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    WT  E+ l++ + +++G g+W+ I+  +  +Rt+ ++  + qk+
  Zmw_sc00287.1.g00110.1.am.mk 142 LWTHHEHMLFLSGLRLYGRGNWRDISMLIE-TRTPLEVSIHAQKF 185
                                   5*****************************.*******9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.518138190IPR017884SANT domain
SMARTSM007179.1E-8139188IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.0E-8139188IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.9E-7140178IPR009057Homeodomain-like
PfamPF002495.6E-7142184IPR001005SANT/Myb domain
SuperFamilySSF466897.48E-12143190IPR009057Homeodomain-like
CDDcd001677.42E-8143186No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MSPSQHSPLH NSNYQQLFEP LPTDMVPGQV TPKPNGVWSR SEIKTMKSLI RRHNNDVNNN  60
GKDIVDLLQE RFHYKEKHQV TDLYLDIVTE MMQTLQLQQG SGTASNINNP PPPVEEPAAM  120
DNAAVAVVPQ PGPAWCPARR RLWTHHEHML FLSGLRLYGR GNWRDISMLI ETRTPLEVSI  180
HAQKFFRKLG KAARTQRSSV NAKPCSQNPS KGKALATTDG GYNLGDSQSS SQLAAMNTQA  240
KVSSPFLYHV DQASSSGGSS QAAWTGDQQN FVPDELLEVF AQKL
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3526734