PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zmw_sc00277.1.g00260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 220aa MW: 23872.8 Da PI: 7.6738 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 39.3 | 1.6e-12 | 40 | 78 | 15 | 56 |
AP2 15 WvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 W+AeIrdp + +r++lg+f+t e Aa a++ a+++++g+ Zmw_sc00277.1.g00260.1.sm.mk 40 WAAEIRDP-----HraARVWLGTFDTVEAAALAYDVAALRFRGN 78 *******7.....338*************************985 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.804 | 17 | 86 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-12 | 33 | 86 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.3E-17 | 37 | 78 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.96E-12 | 39 | 80 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.8E-7 | 40 | 77 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MDFFLPVPVP VPESITTYPT VQFSPHARSK FAVNQSSVTW AAEIRDPHRA ARVWLGTFDT 60 VEAAALAYDV AALRFRGNFP ESAALPAAPT VPQAASEPPP ARPEGVLESQ AAMMMGDGGG 120 EYAEYARFLQ GAGEPPRFVD QTVARAPQTP SAVPVPGAAH HFRPQSSRSS IHRSCQFLVR 180 ALGGGLRRRQ ETPQDDTCAR ARPQRSDTAD LTLLTFLDHR |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A3L6Q158 | 5e-27 | A0A3L6Q158_PANMI; Putative AP2/EREBP transcription factor superfamily protein | ||||
STRING | Pavir.Ha01720.1.p | 6e-26 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9894 | 25 | 40 |