PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00277.1.g00150.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 485aa MW: 52046.2 Da PI: 9.5497

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00277.1.g00150.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.6e-05	252	275	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C dC+++F ++L+ H + H Zmw_sc00277.1.g00150.1.am.mk 252 FPCADCDEVFVKAESLELHRAKrH 275 89*****************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.141	252	280	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	254	275	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	3.64E-16	277	484	No hit	No description
Gene3D	G3DSA:3.90.228.10	6.8E-10	278	483	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 485 aa Download sequence Send to blast
MNRRWSRSGI GSMMARCPCM PRQAFDLGIR GLACLFIRLP PRTITKDERP KRVVKGAISK 60 LIMHGADKGA TKKKMNGEAG KTTTKKPSHS WMTMGLYYPS SGKSGGQAKA AMSTEGKNGG 120 TNEKRNSGGD KKKRSMSLSI TRSVACAGSI CSTKESSVMS RDRGASASSR SLRAPNDVVS 180 AAAVSATSSF NSEATATTTV TVSSSSPFSS ALSSPLSSLG GSSFRGVQIR KLSGCYSCQS 240 VFDPRSLDTS TFPCADCDEV FVKAESLELH RAKRHAVSEL GPEDTSRNIV QIIFQSSWLR 300 KQAPVCRIER ILKVQSGDGT VKRFEQYKES IKERASNDQG KKNARCVADG NELLRFYATT 360 FTCALGASGG TALCGAPWTQ CKLCGIIKDG FRVDEEGKIA VMATSGRAHD MADALSDGEK 420 KAMLVCRVVA GRVKRATDDT ELSEESDCDS VSPCSSDGVY SDLDELLVFN PRAILPCFVV 480 IYSGY

Sequence ? help Back to Top

Protein Sequence Length: 485 aa Download sequence Send to blast

MNRRWSRSGI GSMMARCPCM PRQAFDLGIR GLACLFIRLP PRTITKDERP KRVVKGAISK  60
LIMHGADKGA TKKKMNGEAG KTTTKKPSHS WMTMGLYYPS SGKSGGQAKA AMSTEGKNGG  120
TNEKRNSGGD KKKRSMSLSI TRSVACAGSI CSTKESSVMS RDRGASASSR SLRAPNDVVS  180
AAAVSATSSF NSEATATTTV TVSSSSPFSS ALSSPLSSLG GSSFRGVQIR KLSGCYSCQS  240
VFDPRSLDTS TFPCADCDEV FVKAESLELH RAKRHAVSEL GPEDTSRNIV QIIFQSSWLR  300
KQAPVCRIER ILKVQSGDGT VKRFEQYKES IKERASNDQG KKNARCVADG NELLRFYATT  360
FTCALGASGG TALCGAPWTQ CKLCGIIKDG FRVDEEGKIA VMATSGRAHD MADALSDGEK  420
KAMLVCRVVA GRVKRATDDT ELSEESDCDS VSPCSSDGVY SDLDELLVFN PRAILPCFVV  480
IYSGY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002449060.2	1e-166	cell wall integrity and stress response component 1
TrEMBL	A0A1B6PQ86	1e-165	A0A1B6PQ86_SORBI; Uncharacterized protein
STRING	Sb05g004260.1	1e-166	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80