PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00270.1.g00240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 329aa MW: 35818.9 Da PI: 10.8244 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.9 | 6.8e-20 | 151 | 200 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+WvAeIr p++ r+r +lg+f+t eeAa a+++a+ +l+g Zmw_sc00270.1.g00240.1.am.mk 151 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTSEEAALAYDQAAYRLRG 200 59******9.**********955...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 5.38E-29 | 150 | 210 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 3.0E-32 | 151 | 210 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.209 | 151 | 208 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-22 | 151 | 210 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.9E-35 | 151 | 214 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 7.3E-15 | 152 | 200 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-11 | 152 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.1E-11 | 174 | 190 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 329 aa Download sequence Send to blast |
LNAIVAETRA RRPRPGPRGH PHQNQTAPRP VVPRHAPPTY TFRYHYGHVP VERTRDAVAV 60 AAQRVPCRVE ATRARRSSAR GRASATSTKL PAVVGLVSGE VRARLVKFSL ERGLPIRPDF 120 YPRRSAGVVP RGSRSRTRXX XXXXPPRPQK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT 180 FDTSEEAALA YDQAAYRLRG DAARLNFPDN AASRAPLDPA VDAKLQTICA TIAAASKGKG 240 GKGARAVPIN APCAQQPESP SHSSSDEGTG SGSDDEGSSS AAAAVAAVAP LAEMGQLDFS 300 EVPWDEAESF VLCKYPSYEI EWDALLASN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-19 | 150 | 208 | 4 | 63 | ATERF1 |
3gcc_A | 3e-19 | 150 | 208 | 4 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820073.1 | 7e-90 | ethylene-responsive transcription factor RAP2-13-like | ||||
Swissprot | Q8H1E4 | 7e-49 | RAP24_ARATH; Ethylene-responsive transcription factor RAP2-4 | ||||
TrEMBL | A0A0A9FEZ5 | 2e-91 | A0A0A9FEZ5_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.Fa01600.1.p | 1e-88 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP382 | 35 | 203 |
Publications ? help Back to Top | |||
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