PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00259.1.g00270.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 400aa    MW: 43483.7 Da    PI: 4.9094
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00259.1.g00270.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.51.8e-19129178255
                             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                     +y+G+r+++ +g+W+AeIrdps+     r++lg++ taeeAa+a++a ++k++g
  Zmw_sc00259.1.g00270.1.sm.mkhc 129 QYRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTYNTAEEAARAYDAEARKIRG 178
                                     69*******.**********965...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.5E-32129187IPR001471AP2/ERF domain
CDDcd000182.74E-32129187No hitNo description
SMARTSM003804.4E-37129192IPR001471AP2/ERF domain
SuperFamilySSF541712.42E-22129187IPR016177DNA-binding domain
PROSITE profilePS5103223.933129186IPR001471AP2/ERF domain
PfamPF008476.7E-12130178IPR001471AP2/ERF domain
PRINTSPR003672.7E-11130141IPR001471AP2/ERF domain
PRINTSPR003672.7E-11152168IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 400 aa     Download sequence    Send to blast
MCGGAILSGF IRPSGGAAAK KKKQQLRRVT ADVLWPELGG KAGEENFEAD FRQFERGLSE  60
DDVDAAGDED EDDVVQLEVP PSPEWFVFGG AAKAAPVVPR STVDDVITPK SSHHDGPAAK  120
AAKRSRKNQY RGIRQRPWGK WAAEIRDPSK GVRVWLGTYN TAEEAARAYD AEARKIRGKK  180
AKVNFPDEGL NGQKSIQKPS AANQTKVAPP SMTCANEVFG HPSNGDNDLF AMFAFSDTKV  240
PVKPAETAAF LPPLKPLVPT ERFGANMLSD QSSNSYGSSD FGWDDETMMP DYTSVLAPNN  300
SVPAYAELVY LQDPPSKRMR NNYGVAVPVP KGNGVPNLTQ DMSGFDPEMR VLQMPYVDSS  360
SDVSMDSLLQ NDGTQDGDLW SLDELPMEAG PLPVAKMKSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A9e-20128186160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A9e-20129186563ATERF1
3gcc_A9e-20129186563ATERF1
5wx9_A3e-191291881474Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800946.11e-171ethylene-responsive transcription factor 1-like
TrEMBLA0A0A9P8100.0A0A0A9P810_ARUDO; Uncharacterized protein
STRINGPavir.J01991.1.p1e-171(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112003142