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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Zmw_sc00258.1.g00230.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family | bHLH | ||||||||
| Protein Properties | Length: 300aa MW: 33321.6 Da PI: 5.1375 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 42.8 | 9.3e-14 | 80 | 125 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+ ++Er RR+++N+++ eLr+++P+ +K++Ka+i + A+eYI +Lq
Zmw_sc00258.1.g00230.1.sm.mkhc 80 NIIMERDRRRKLNEKLYELRSVVPNI-----TKMDKASIIKDAIEYIEQLQ 125
5689*********************7.....7******************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 16.139 | 75 | 124 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 3.09E-14 | 79 | 129 | No hit | No description |
| SuperFamily | SSF47459 | 1.7E-17 | 79 | 140 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 2.2E-11 | 80 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 7.7E-16 | 81 | 130 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 8.4E-17 | 81 | 139 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd04873 | 0.00956 | 204 | 266 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 300 aa Download sequence Send to blast |
MDAAEMGDSF ENYWETQRFF DCEEFMSSIY PGSGGAGEDT MSYYDSSSPD GSQSSSAAPA 60 EFGHKAQSAG GGDVAGANKN IIMERDRRRK LNEKLYELRS VVPNITKMDK ASIIKDAIEY 120 IEQLQAEERQ MLQEVRALES AAPGHGNVGT YNYEHDEGVL LPTERRKRTK RAQSAPSLPA 180 PSATPSPPVE VLELRVSEVG DRVLVVSVTC RKRRDAMARV CRAIEELRLR VITANITSVA 240 GCLVHTVFVE VDHTDRIQMK QMIETADTYD LPGSDDKIII LIISCMTMIN RHSSPWGKIQ |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004975234.1 | 1e-106 | transcription factor bHLH35 | ||||
| TrEMBL | A0A1E5V009 | 1e-107 | A0A1E5V009_9POAL; Transcription factor bHLH35 | ||||
| STRING | Si010812m | 1e-105 | (Setaria italica) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP1044 | 38 | 133 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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