PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00252.1.g00500.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HSF

Protein Properties

Length: 299aa MW: 31622.4 Da PI: 6.8963

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00252.1.g00500.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	94.4	1.2e-29	21	128	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.......X CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.......k 75 F+ k+y++++d++++ +i w +++nsfvv d+ f++++Lp +Fkhsnf+SFvRQLn+Y + + ++ + Zmw_sc00252.1.g00500.1.sm.mk 21 FVAKTYRMVDDPATDGVIAWGADNNSFVVADPFAFSQTLLPAHFKHSNFSSFVRQLNTYVRALRLSAR-VVRAlegfrkvD 100 9********************************************************644333333.323345555445 PP TTSEEEEESXXXXXXXXXXXXXXXXXXX CS HSF_DNA-bind 76 ekiweFkhksFkkgkkellekikrkkse 103 ++ weF+h sF +g+++ll++i r++s+ Zmw_sc00252.1.g00500.1.sm.mk 101 PDRWEFAHVSFLRGQTHLLRHIVRRSSS 128 9**********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	2.18E-30	17	125	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	7.9E-35	17	125	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.3E-45	17	125	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.3E-12	21	44	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	1.5E-26	21	125	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.3E-12	59	71	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	6.3E-12	72	84	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence Send to blast
MTSGVVVADA AAAAPVGVAP FVAKTYRMVD DPATDGVIAW GADNNSFVVA DPFAFSQTLL 60 PAHFKHSNFS SFVRQLNTYV RALRLSARVV RALEGFRKVD PDRWEFAHVS FLRGQTHLLR 120 HIVRRSSSNN GGVGGGKRKD DGGGGGGTGE EDGAAAVAME VARLKREQRA IEDQVAAMWR 180 RVQETERRPK QMLAFLVKVA GDPQVLRRLL DSSFCVDGGG AGHGLAASGS SDGAGAEIVK 240 RPRLLLDGDS AGRHAAPVIY GAGDDDVDGF FAADDVGFGV GDSGFLPQYA FPVDSTSGY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	3e-22	12	127	20	131	Heat shock factor protein 1
5d5v_B	3e-22	12	127	20	131	Heat shock factor protein 1
5d5v_D	3e-22	12	127	20	131	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001152657.1	1e-107	heat shock factor protein 1
Swissprot	Q6EUG4	7e-96	HFC2A_ORYSJ; Heat stress transcription factor C-2a
TrEMBL	A0A3L6EVM0	1e-106	A0A3L6EVM0_MAIZE; Heat stress transcription factor C-2a
TrEMBL	B4FXG7	1e-106	B4FXG7_MAIZE; Heat stress transcription factor C-1
STRING	GRMZM2G105348_P01	1e-107	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4471	34	70

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]