PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00248.1.g00450.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 346aa MW: 38262.8 Da PI: 8.1546 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 60.9 | 3e-19 | 37 | 106 | 2 | 71 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 Wt e+++Liea+r+++e+ g + ++W++v +++++ g++rs++qC+++w+nl ++ykk+++ e + Zmw_sc00248.1.g00450.1.am.mk 37 WTLPETMQLIEAKRKVHEERHPGDQGLARWRWVEDYCWRAGCRRSQNQCNDRWDNLMRDYKKVRAYEMAG 106 ****************************************************************988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 7.909 | 29 | 93 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-5 | 31 | 95 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.97E-6 | 32 | 95 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 7.1E-13 | 35 | 105 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MGGFSGVPHS QQGSDQEARN GALPLITASR AYRRGNWTLP ETMQLIEAKR KVHEERHPGD 60 QGLARWRWVE DYCWRAGCRR SQNQCNDRWD NLMRDYKKVR AYEMAGRAPS YWAMGRAERK 120 EKGLPSNLLR EVYDAMAEVV ERKKMSTGCS GGAGGMYLGP SSSFLDIPLQ ASPLAQVLPP 180 AMPQPLGPQE QVTRGQGVPQ FSSESLERKR RRSSLDEQLP ESGTPDPGTH FHHQEHEHPR 240 DRLKDDRCDG SSDGDSDDEE AVLSGAIGRS AAILSEALEN REAAEERRHR EVMAVEERRG 300 RALQARRKAG EQCVAELAAA VNQLAGSMLA LAGAKHKGGH GPAAPK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 207 | 211 | RKRRR |
2 | 207 | 212 | RKRRRS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025792444.1 | 1e-144 | uncharacterized protein LOC112873645 | ||||
TrEMBL | A0A3L6SE93 | 1e-144 | A0A3L6SE93_PANMI; Uncharacterized protein | ||||
STRING | Pavir.J22454.1.p | 1e-139 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3294 | 35 | 71 |