PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00245.1.g00340.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 450aa MW: 50357.9 Da PI: 4.3147

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00245.1.g00340.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.2	1.4e-48	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknra 77 lppGfrFhPtd el ++yLk+k+ gkkl + ++i+e+++yk+ PwdLp k ++++++ ew+fF++rdkky++g+r+nra Zmw_sc00245.1.g00340.1.sm.mkhc 6 LPPGFRFHPTDVELCSYYLKRKIMGKKLLV-DAIAEIELYKFAPWDLPdKsCLRSRDLEWFFFCPRDKKYSNGSRTNRA 83 79***********************999.89**********96347777888***************** PP NAM 78 tksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 t +gyWk++gkd++++ +++ vg kktL+f++g+apkg +tdWvm ey++ Zmw_sc00245.1.g00340.1.sm.mkhc 84 TPNGYWKTSGKDRTIML-NSRIVGSKKTLIFHEGKAPKGDRTDWVMYEYKM 133 *************.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.66E-59	3	156	IPR003441	NAC domain
PROSITE profile	PS51005	55.57	6	156	IPR003441	NAC domain
Pfam	PF02365	1.3E-24	7	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 450 aa Download sequence Send to blast
MAQTSLPPGF RFHPTDVELC SYYLKRKIMG KKLLVDAIAE IELYKFAPWD LPDKSCLRSR 60 DLEWFFFCPR DKKYSNGSRT NRATPNGYWK TSGKDRTIML NSRIVGSKKT LIFHEGKAPK 120 GDRTDWVMYE YKMEDDSLVS AGFSKDAYVI CKIFKKSGVG PRIGEQYGAP FNEDEWENAE 180 AETSMFHLMP SSEVINPVED LHVQQAIPAG TLEEPILQHS SAACAREESS FDANANTCAE 240 DMTFGNAVAG SDIHDGMVSE NNVSNEFNNL CNPPEFDGFL WEELSKFLND SPNDNSFGGN 300 SVLPPMSEAE AHAFEMNTLD LYNELSGLSG IGDVPNTYRG DDGTMEHTTL PADRELSFDE 360 YLELNDLLSP ETSFPCELPA QNQYLRHPLT QYTYNEHHND VTALPASFEP CSSLPTMPGL 420 FDVFPPTNNS GFATDQATPS SDPSMQYPFL

Sequence ? help Back to Top

Protein Sequence Length: 450 aa Download sequence Send to blast

MAQTSLPPGF RFHPTDVELC SYYLKRKIMG KKLLVDAIAE IELYKFAPWD LPDKSCLRSR  60
DLEWFFFCPR DKKYSNGSRT NRATPNGYWK TSGKDRTIML NSRIVGSKKT LIFHEGKAPK  120
GDRTDWVMYE YKMEDDSLVS AGFSKDAYVI CKIFKKSGVG PRIGEQYGAP FNEDEWENAE  180
AETSMFHLMP SSEVINPVED LHVQQAIPAG TLEEPILQHS SAACAREESS FDANANTCAE  240
DMTFGNAVAG SDIHDGMVSE NNVSNEFNNL CNPPEFDGFL WEELSKFLND SPNDNSFGGN  300
SVLPPMSEAE AHAFEMNTLD LYNELSGLSG IGDVPNTYRG DDGTMEHTTL PADRELSFDE  360
YLELNDLLSP ETSFPCELPA QNQYLRHPLT QYTYNEHHND VTALPASFEP CSSLPTMPGL  420
FDVFPPTNNS GFATDQATPS SDPSMQYPFL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	7e-50	2	157	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014660428.1	0.0	NAC domain-containing protein 82
TrEMBL	A0A368QI29	0.0	A0A368QI29_SETIT; Uncharacterized protein
STRING	Pavir.J07259.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4731	36	64