PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00231.1.g00120.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 568aa MW: 60441.3 Da PI: 8.3697 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 66 | 3.9e-21 | 277 | 320 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 + en+s rq+t+skRr gilKKA+ELS+LCd++ +++fs+tgk Zmw_sc00231.1.g00120.1.am.mk 277 KLENSSGRQITYSKRRSGILKKAKELSILCDIDLILLMFSPTGK 320 679***************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 3.8E-29 | 268 | 327 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-21 | 268 | 328 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.474 | 268 | 320 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-17 | 270 | 290 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.3E-18 | 278 | 321 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-17 | 290 | 305 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.9E-17 | 305 | 326 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 568 aa Download sequence Send to blast |
LASVSSCPGR WTVAGSAPLT GQTRKRSGLD EQRRAFGGGG GARAGLPDVS RVPGTTQQGH 60 TDYQQAPSAT QVAFESAGAA CRERSFLVTL ILMHNSGSRS IWLPALCAAV LYAGTETSGI 120 DTSPKDAMGA SSVTGQLGFW GTTCRLNPSP SLPRDSLSTS SPRASFSLLA PVSPDPRTLP 180 VSPVLGPISL TLPPSLPLAL SPLLPSGSRS APLNRSTDGK LVGAFGLSVV ARSPALAPRR 240 VCVSSPPETG SSVGRGNRTP LVWLFSAMGR VKLKIKKLEN SSGRQITYSK RRSGILKKAK 300 ELSILCDIDL ILLMFSPTGK PTICIGDKRK LESLEENVAK QHMIGLQCAA AQFQNDMQLP 360 LGLTGEPNVS QWFHSGSIDM QQPVMLPDDP SLLHQRDIGC STGTSLQSYP GYFSMSKHST 420 DTGGGSEHGQ PSLQQTPPPD FSHADCLTSL HLGAQFPYTP FDHTSLLNER MFRPDVVELH 480 DGGASMEFGG GHFDLPRPGD EASFQNWASA TCGTAIFDHH QHQQQQQPHH QQQQPSSAQL 540 PAATVLAAAP FDRAVVYPGP SQHQQVMI |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Pavir.Hb00170.1.p | 1e-108 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4626 | 36 | 59 |