PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00220.1.g00280.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 529aa MW: 55963.6 Da PI: 11.309

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00220.1.g00280.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.5	5e-05	335	357	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F+++ L H++ H Zmw_sc00220.1.g00280.1.am.mk 335 FECHYCRRNFPTSQALGGHQNAH 357 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.46E-5	332	363	No hit	No description
PROSITE profile	PS50157	11.323	335	362	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	337	357	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MANSFQRTSE PLLSSHRSID PSLTHSSKQP LFATVDIAQD DLGWGAGRSR GKRRKDRQCP 60 CPVASRTAAA RKQTSTRKRG AAGLRVTASR CSRNGFSLLQ ERRPEKASIS SSFERLVLPG 120 VASPGHRPPP LLRSSHGIEE TTGQVRPTEL PRFRRLYSSI IQLMGDGSIA ARGLLFLHFS 180 SPQSSNPNPT PALLSPSSTT EAGRTISLSR IQSRMSKRDA PDGKTSASAG AAASIDSFSQ 240 LPFIHPGLPP PRPPRPPPSA GSTPGIRLFG IDVPPDASAT AKTASPPPPP PTGVKVTEAA 300 NVVEESAETT NTDATTTTTA GAGASGDGAG GARKFECHYC RRNFPTSQAL GGHQNAHKRE 360 RQHAKRAQFQ TAMAMHHRHH HGQYYPLVPD AAHLHVTYRH HHRFSPAPPP PHYPSWAGAG 420 RYSYYNGPGS ISQPINGSPV APSGSWRGPL GGVGVGAAFA ARSQERPAPP PSLPVPGVGG 480 EEPRLGGMAR PPGSRSFSPS TSSSSSSSSP HQLPAPPEHK ENVSLNLSL

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MANSFQRTSE PLLSSHRSID PSLTHSSKQP LFATVDIAQD DLGWGAGRSR GKRRKDRQCP  60
CPVASRTAAA RKQTSTRKRG AAGLRVTASR CSRNGFSLLQ ERRPEKASIS SSFERLVLPG  120
VASPGHRPPP LLRSSHGIEE TTGQVRPTEL PRFRRLYSSI IQLMGDGSIA ARGLLFLHFS  180
SPQSSNPNPT PALLSPSSTT EAGRTISLSR IQSRMSKRDA PDGKTSASAG AAASIDSFSQ  240
LPFIHPGLPP PRPPRPPPSA GSTPGIRLFG IDVPPDASAT AKTASPPPPP PTGVKVTEAA  300
NVVEESAETT NTDATTTTTA GAGASGDGAG GARKFECHYC RRNFPTSQAL GGHQNAHKRE  360
RQHAKRAQFQ TAMAMHHRHH HGQYYPLVPD AAHLHVTYRH HHRFSPAPPP PHYPSWAGAG  420
RYSYYNGPGS ISQPINGSPV APSGSWRGPL GGVGVGAAFA ARSQERPAPP PSLPVPGVGG  480
EEPRLGGMAR PPGSRSFSPS TSSSSSSSSP HQLPAPPEHK ENVSLNLSL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001142755.1	1e-78	Zinc finger protein
TrEMBL	A0A0A9IGN1	2e-79	A0A0A9IGN1_ARUDO; Uncharacterized protein
STRING	GRMZM2G151639_P01	5e-78	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP834	17	20