PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00203.1.g00010.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 229aa MW: 24613.1 Da PI: 10.4043

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00203.1.g00010.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	85.2	1.3e-26	138	228	1	90
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekew.yfFskrdkkyatgkrknratk 79 lppG rF+P deel+++yL++k+++ + +++evd+yk+ePwdL p++ +++++ + yfF+ r+ k a+g r+nrat Zmw_sc00203.1.g00010.1.am.mk 138 LPPGSRFRPMDEELLTHYLTRKAANVGFAS-AAVREVDLYKAEPWDLlPAARAGDDDGCrYFFCARRVKFASGLRTNRATP 217 79***********************988.78*********95543334445555***************** PP NAM 80 sgyWkatgkdk 90 +gyWk+tgkdk Zmw_sc00203.1.g00010.1.am.mk 218 AGYWKSTGKDK 228 *******97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.18E-29	134	228	IPR003441	NAC domain
PROSITE profile	PS51005	31.461	138	229	IPR003441	NAC domain
Pfam	PF02365	2.8E-13	139	228	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
DSGGATFRPA GALAPSPLDR LQLLPAIINC FALLARYPPS APPPVTARRT HLGKTPKPPA 60 APGSHRIMHA SSVSIKPIHT QVSSSDMERA QGSQSLAQQA CAFAATRDGQ LPANTNTQMR 120 VPCIGTGNHP RDRPCTGLPP GSRFRPMDEE LLTHYLTRKA ANVGFASAAV REVDLYKAEP 180 WDLLPAARAG DDDGCRYFFC ARRVKFASGL RTNRATPAGY WKSTGKDKV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-21	138	229	17	106	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-21	138	229	17	106	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-21	138	229	17	106	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-21	138	229	17	106	NO APICAL MERISTEM PROTEIN
3swm_A	1e-21	138	229	20	109	NAC domain-containing protein 19
3swm_B	1e-21	138	229	20	109	NAC domain-containing protein 19
3swm_C	1e-21	138	229	20	109	NAC domain-containing protein 19
3swm_D	1e-21	138	229	20	109	NAC domain-containing protein 19
3swp_A	1e-21	138	229	20	109	NAC domain-containing protein 19
3swp_B	1e-21	138	229	20	109	NAC domain-containing protein 19
3swp_C	1e-21	138	229	20	109	NAC domain-containing protein 19
3swp_D	1e-21	138	229	20	109	NAC domain-containing protein 19
4dul_A	1e-21	138	229	17	106	NAC domain-containing protein 19
4dul_B	1e-21	138	229	17	106	NAC domain-containing protein 19

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP23139	5	6