PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00200.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 363aa    MW: 39987.9 Da    PI: 8.0398
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00200.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.72.1e-32111167259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     dDgynWrKYGqK vkg e+prsYY+Ct+++Cpvkkkversa d+++++i+Y+g+Hnh+
  Zmw_sc00200.1.g00060.1.sm.mkhc 111 DDGYNWRKYGQKAVKGGEYPRSYYKCTHSSCPVKKKVERSA-DGQITQIIYRGQHNHH 167
                                     8****************************************.***************7 PP
2WRKY104.74.9e-33280338159
                                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+
  Zmw_sc00200.1.g00060.1.sm.mkhc 280 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 338
                                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-29102169IPR003657WRKY domain
PROSITE profilePS5081124.443105169IPR003657WRKY domain
SuperFamilySSF1182906.41E-26108169IPR003657WRKY domain
SMARTSM007746.9E-34110168IPR003657WRKY domain
PfamPF031067.1E-25111167IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.0E-36267340IPR003657WRKY domain
SuperFamilySSF1182902.35E-29272340IPR003657WRKY domain
PROSITE profilePS5081137.172275340IPR003657WRKY domain
SMARTSM007741.0E-38280339IPR003657WRKY domain
PfamPF031061.1E-25281338IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
KIFVPWLIYV FIILFLQGTF EMSHQQALAQ VTAQAVHSPY NIVNQTDYSV PFSSTTTPPL  60
TSQNVNSSAN LVSTATKMVP TQPSHTGNTN IQSNEISQLQ NSALTADKPA DDGYNWRKYG  120
QKAVKGGEYP RSYYKCTHSS CPVKKKVERS ADGQITQIIY RGQHNHHRPP KRRSKDGGEL  180
LNNGDDFDEK NEDAQTRSEP GSHDHSGKVE ASSDGPAGPS MSKRGEGSGP LSGSSDSEDD  240
ADDEARADHG DAGPANANRR RVPTPAQRII VQTNSEVDLL DDGYRWRKYG QKVVKGNPHP  300
RSYYKCTYQG CDVKKHIERS SQDPKAVITT YEGKHSHDVP AARNSSHAAA NVIFNALDIS  360
YLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-38111341878Probable WRKY transcription factor 4
2lex_A8e-38111341878Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1167172RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467677.20.0probable WRKY transcription factor 4
SwissprotQ9ZQ701e-93WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLC5WVP70.0C5WVP7_SORBI; Uncharacterized protein
STRINGSb01g032120.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]