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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00200.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 363aa MW: 39987.9 Da PI: 8.0398 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 102.7 | 2.1e-32 | 111 | 167 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK vkg e+prsYY+Ct+++Cpvkkkversa d+++++i+Y+g+Hnh+ Zmw_sc00200.1.g00060.1.sm.mkhc 111 DDGYNWRKYGQKAVKGGEYPRSYYKCTHSSCPVKKKVERSA-DGQITQIIYRGQHNHH 167 8****************************************.***************7 PP | |||||||
2 | WRKY | 104.7 | 4.9e-33 | 280 | 338 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++ers++dpk+v++tYeg+H h+ Zmw_sc00200.1.g00060.1.sm.mkhc 280 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYQGCDVKKHIERSSQDPKAVITTYEGKHSHD 338 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-29 | 102 | 169 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.443 | 105 | 169 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-26 | 108 | 169 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.9E-34 | 110 | 168 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.1E-25 | 111 | 167 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 3.0E-36 | 267 | 340 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-29 | 272 | 340 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.172 | 275 | 340 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-38 | 280 | 339 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.1E-25 | 281 | 338 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 363 aa Download sequence Send to blast |
KIFVPWLIYV FIILFLQGTF EMSHQQALAQ VTAQAVHSPY NIVNQTDYSV PFSSTTTPPL 60 TSQNVNSSAN LVSTATKMVP TQPSHTGNTN IQSNEISQLQ NSALTADKPA DDGYNWRKYG 120 QKAVKGGEYP RSYYKCTHSS CPVKKKVERS ADGQITQIIY RGQHNHHRPP KRRSKDGGEL 180 LNNGDDFDEK NEDAQTRSEP GSHDHSGKVE ASSDGPAGPS MSKRGEGSGP LSGSSDSEDD 240 ADDEARADHG DAGPANANRR RVPTPAQRII VQTNSEVDLL DDGYRWRKYG QKVVKGNPHP 300 RSYYKCTYQG CDVKKHIERS SQDPKAVITT YEGKHSHDVP AARNSSHAAA NVIFNALDIS 360 YLF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-38 | 111 | 341 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 8e-38 | 111 | 341 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 167 | 172 | RPPKRR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002467677.2 | 0.0 | probable WRKY transcription factor 4 | ||||
Swissprot | Q9ZQ70 | 1e-93 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | C5WVP7 | 0.0 | C5WVP7_SORBI; Uncharacterized protein | ||||
STRING | Sb01g032120.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1345 | 38 | 122 |
Publications ? help Back to Top | |||
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