PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00195.1.g00060.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 380aa MW: 41106.6 Da PI: 6.7236 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 164.9 | 3e-51 | 12 | 152 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknrat 78 lppGfrFhPtdee+v+ yL +k + + ++i+ v+++++ePwdLp+k+k +ek +wyfF+++d ky+tg+r+nrat Zmw_sc00195.1.g00060.1.sm.mkhc 12 LPPGFRFHPTDEEVVTSYLVPKSLNATSFNPRAIAVVNLNSCEPWDLPSKAKMGEKdQWYFFCQKDMKYPTGTRTNRAT 90 79********************99988666689***************766666555********************** PP NAM 79 ksgyWkatgkdkevlsk...........kgelvglkktLvfykgrapkgektdWvmheyrle 129 ++gyWkatgkd+e+++ +++l+g+kktLvfy+grap+g+kt+Wvmhe+rle Zmw_sc00195.1.g00060.1.sm.mkhc 91 EKGYWKATGKDREIFKPgaspgdgggrrDDQLIGMKKTLVFYTGRAPRGTKTNWVMHEFRLE 152 ****************9888888877766667***************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-57 | 9 | 177 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.696 | 12 | 177 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.1E-27 | 13 | 151 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 380 aa Download sequence Send to blast |
MVDQEEQGDL PLPPGFRFHP TDEEVVTSYL VPKSLNATSF NPRAIAVVNL NSCEPWDLPS 60 KAKMGEKDQW YFFCQKDMKY PTGTRTNRAT EKGYWKATGK DREIFKPGAS PGDGGGRRDD 120 QLIGMKKTLV FYTGRAPRGT KTNWVMHEFR LEGAYRNHPN LRLSPKDEWV VCKVFHKSNG 180 EEDKKAAAAA VEDFAAGTPT VSSISVDATG AVDGGDEFLD SMFFDPYFDY STGTFPADNH 240 AATMMNDVGG FFGPPYDAFD DDRTSRNPLH QAAAVSSATV PLVPPSSSGS YRSSWNTVPS 300 HYATGSSSYN LHDQAMMERA LGGAGFPNFA GGGGFPSYSV PGISQQNSLR RRGYATGRLA 360 SSAAAAAANI TGQAAKNLGP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-46 | 9 | 182 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-46 | 9 | 182 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-46 | 9 | 182 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-46 | 9 | 182 | 14 | 170 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-46 | 9 | 182 | 14 | 170 | NAC domain-containing protein 19 |
4dul_B | 3e-46 | 9 | 182 | 14 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response (By similarity). Binds to DNA-specific sequences of CLPD1 and OAT promoters in vitro (PubMed:18813954). {ECO:0000250|UniProtKB:Q7F2L3, ECO:0000269|PubMed:18813954}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt and cold stresses. {ECO:0000269|PubMed:18813954}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004977422.1 | 1e-116 | NAC domain-containing protein 77 | ||||
Swissprot | Q5CD17 | 1e-94 | NAC77_ORYSJ; NAC domain-containing protein 77 | ||||
TrEMBL | K3Y876 | 1e-114 | K3Y876_SETIT; Uncharacterized protein | ||||
STRING | Si010417m | 1e-115 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5120 | 30 | 63 |