PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00187.1.g00380.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family TALE
Protein Properties Length: 700aa    MW: 75702.8 Da    PI: 10.1013
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00187.1.g00380.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82e-096236582055
                                   HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                      Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                                   +k +yps++e+  LA+++gL+++q+ +WF N+R ++
  Zmw_sc00187.1.g00380.1.am.mk 623 YKWPYPSETEKIALAESTGLDQKQINNWFINQRKRH 658
                                   4679*****************************885 PP
2ELK36.79.1e-13578599122
                           ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                                   ELK qLl+KYsgyL+sL+qEFs
  Zmw_sc00187.1.g00380.1.am.mk 578 ELKYQLLKKYSGYLSSLRQEFS 599
                                   9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012558.1E-22359403IPR005540KNOX1
PfamPF037902.0E-21360401IPR005540KNOX1
SMARTSM012565.4E-28406458IPR005541KNOX2
PfamPF037911.9E-21412456IPR005541KNOX2
PROSITE profilePS5121311.627578598IPR005539ELK domain
SMARTSM011881.2E-7578599IPR005539ELK domain
PfamPF037899.5E-10578599IPR005539ELK domain
PROSITE profilePS5007112.892598661IPR001356Homeobox domain
SuperFamilySSF466893.25E-19599673IPR009057Homeodomain-like
SMARTSM003894.4E-13600665IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-27603662IPR009057Homeodomain-like
CDDcd000863.06E-12610662No hitNo description
PfamPF059202.4E-16618657IPR008422Homeobox KN domain
PROSITE patternPS000270636659IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 700 aa     Download sequence    Send to blast
MGRAVLARDD DGRHGLRGGL SSQTGGSQTA VDPAFPRQRH DGRLQRGSGM SIRGRRGASA  60
VHRSELGFRS FLATTQLYQH RGGSETDGGK VKETATRDHS IVRVVTIQQV PVSSKELRTC  120
PVVADAWSSK WNACDCHASI VVRAKTFGRT APLAASRGCL AAGTCKYSCR SVKYTVSTDM  180
EPPQMQLHFV DYNLLLQPYL RFDARKGIAT SHRRPHLSLP LVPHPSVPPS SINISPPPSL  240
SPRPLPAALL STAAPPLLVP RGERGAAVSS RHGGASSSFG NLGAGRSSSG GGGGGSNSKP  300
AASSSFLQLP LSSAAAAPAG VAYYGAPLAL LHQGQATGLS SSSQSQYGRH AEISPAEADA  360
IKAKIVAHPQ YSALLAAYLD CQKVGAPPDV LEKLTAVAGK LDARPPNRHE PRDPELDQFM  420
QEAYCNMLVK YREELTRPID EAMEFLKRVE AQLDSISGGA AAAGSSRLSL AGKTLLQLRP  480
SLASPSSLLV YGRTALGLPH WETVVRDSGK GFRGWQGNPS VSSVARVFRG ALPGFLNAGR  540
VSTVHGKSEG VGSSEDDMDT TGRENETSEI DPRAEDKELK YQLLKKYSGY LSSLRQEFSK  600
KKKKGKLPKE ARQKLLHWWE LHYKWPYPSE TEKIALAEST GLDQKQINNW FINQRKRHWK  660
PSEDMPFVMM EGFHPQTAAA LYMDGPFLAD GMYRLGSRME
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307878.11e-164homeobox protein rough sheath 1 isoform X1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP6753722