PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00180.1.g00300.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 597aa    MW: 64117.9 Da    PI: 9.9761
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00180.1.g00300.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42.1e-19418467255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                    y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa  +++a+ +l+g
  Zmw_sc00180.1.g00300.1.am.mk 418 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEEAALVYDQAAYRLRG 467
                                   59******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.41E-29417477No hitNo description
PROSITE profilePS5103222.853418475IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-22418477IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.9E-31418477IPR001471AP2/ERF domain
SMARTSM003803.5E-34418481IPR001471AP2/ERF domain
PfamPF008475.9E-13419467IPR001471AP2/ERF domain
PRINTSPR003673.5E-10419430IPR001471AP2/ERF domain
PRINTSPR003673.5E-10441457IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 597 aa     Download sequence    Send to blast
MWPCLFVPRA ATTIPAFFDH GEGQRFDPDQ SLVRVLIQII GSPDGIASPS SDVQVKLPAR  60
CGSRQGWSTS LHRGRKIKQQ HLELQPPGRT SSSSIRGDTL RAKPGRFPGH MLLHETRRRR  120
DGSSPPRLLW RHGEDVARAT RNVAGRDAAA QANTKHRHIQ QEQATLPHHK RSSDLAISTH  180
PPTPARDPIH ERPRNYGAVW GQKTPVPETG GSAGSAIIAD THLESGYQRS KGEVTPQSSV  240
TASLKQLPRE TDQAGPVYPR PAAAAAAAAY KTAPRPPFFV LAPIPFHSPH PFPRAPTSHS  300
HPPPQSMAAA IDLSAEELMR ALEPFIRDAS APHGSIPLIP HQLASPPSPF AFHDASTAAA  360
CSSYAGAGAG QLSPAQMQYI QARLHLQQRQ AQSSVLGPRA QPMKASAAAA PLPRPQKLYR  420
GVRQRHWGKW VAEIRLPRNR TRLWLGTFDT AEEAALVYDQ AAYRLRGDAA RLNFPDNAAA  480
RGPLDASVDA KLQALCENIA ASKKASKASA AAAVTSSSGP TSNCSSPSSD DASSSSLESA  540
ESSPSPSLSP SLSPEAATVP EMQQLDFSEA PWDEAAGFAL TKYPSYEIDW DSLLAAN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-18417475463ATERF1
3gcc_A1e-18417475463ATERF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203