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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00179.1.g00280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | WRKY | ||||||||
Protein Properties | Length: 193aa MW: 21092 Da PI: 4.7756 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 48.2 | 2.2e-15 | 124 | 160 | 23 | 59 |
EEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 23 sYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +YYrC+ gC vkk+ver+++dp++v++tY g Hnh Zmw_sc00179.1.g00280.1.am.mk 124 NYYRCSADGCGVKKRVERDRDDPRYVITTYDGVHNHA 160 8***********************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 8.3E-16 | 103 | 161 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 8.37E-17 | 107 | 160 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.867 | 110 | 162 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-16 | 115 | 161 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-10 | 121 | 159 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MRSMAASLGL NREAEAFFNP CSAYSASSPF TTASDYTASF PTSEPVDGTA FFAELDDDRR 60 LFDFEYSPAA ASIFAVNAGD RDDDNEKKMR YAGDEKGARV NGRIGFRTRS EVEILDDGFK 120 WRKNYYRCSA DGCGVKKRVE RDRDDPRYVI TTYDGVHNHA SLAAAIVQYG GDAGAQGFYS 180 SPNSGSPPAA ASY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 3e-17 | 101 | 159 | 3 | 74 | Probable WRKY transcription factor 4 |
2lex_A | 3e-17 | 101 | 159 | 3 | 74 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440727.1 | 1e-62 | probable WRKY transcription factor 50 | ||||
TrEMBL | C5YU85 | 2e-61 | C5YU85_SORBI; Uncharacterized protein | ||||
STRING | Sb09g005700.1 | 4e-62 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP441 | 37 | 206 |