PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00176.1.g00380.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 701aa MW: 72994.5 Da PI: 6.3672

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00176.1.g00380.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	267.7	3.8e-82	342	700	3	374
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 + L ++A+a ++g+ + a+++Larl+++ p g+p+ R a+y++eAL a + ++ + l++ + +++ +laa+k Zmw_sc00176.1.g00380.1.am.mk 342 DELAAAAKATEAGNSTGAREILARLNHQLPPFGKPFLRSASYLKEALLALAEGRHHHSGSRLNT----PLDVALKLAAYKS 418 7899*******************************************999955554444443....34599**** PP GRAS 84 fsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeel 158 fs++sP+l+f+++ta qa+l++++++ +++H+iDfd++ G+QW+++lq+La R+ + p +++ +++s++s++ el Zmw_sc00176.1.g00380.1.am.mk 419 FSDLSPVLQFTNFTATQALLDEIASStaSCIHVIDFDLGVGGQWASFLQELAHRRcaggATMPFVKLSAFVSAASHHPLEL 499 *****************999887799*******************9998666689************** PP GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkv 238 + ++++++fA lg+pfefn++ +++++++ eL + +E++aV+l + + +++L+lvk+l Pkv Zmw_sc00176.1.g00380.1.am.mk 500 RLAKDNISQFAGDLGIPFEFNAI---SVDAINPAELISPTgDEVIAVSLPVGCSARA---PP----LPAILRLVKQLGPKV 570 ******************9...899**9666689****9777665...44....556******** PP GRAS 239 vvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerl 319 vv +++ d+ + +F ++ l++++ ++ l+dsl+a+ + +++ ++k+E++l++++i++ v + ++ + ++Wr+++ Zmw_sc00176.1.g00380.1.am.mk 571 VVAIDHGGDRADLPFSQHYLNCFQSCVFLLDSLDAS-GIDADSASKIEKFLIQPRIEDTVIGRCKS-----DKPMTWRSAF 645 *****************************999.8999***************988887.....7899** PP GRAS 320 eeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++aGF pvp s a++qa++ll++v+++g++ve++ l+l+W++ +Lv+vSaWr Zmw_sc00176.1.g00380.1.am.mk 646 SAAGFAPVPPSILAEAQADCLLKRVQVRGFHVEKRGVGLTLYWQRGELVTVSAWR 700 ****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.254	314	680	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.3E-79	342	700	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 701 aa Download sequence Send to blast
MRAALFGAER NGAADLVGGG KALVEPRSVL DCTRSPSPNN STSTLSSSLG GSAADSAGGV 60 AAVSDNSAAA AKRGAPGEHG GGGGGGKEDW AGGCDLPPIP GGLDMGLVSG DGWDAVLGSA 120 AAAGQDQTFL NWIIGAAGDL DQPGPTLQVH NQPLLDNAGF GFPATDPLGF SLDPHLGGVA 180 SDLSSPGAVS HTSNSGGGSK ASSSFGLFSP ESASLQPTPP PMLFHEGIDT KPPLLAAQPP 240 GLLHQYQHHP PPPASTFFMP LPSFTDHNQQ PPLLQPPPKR HPSMADDLYH ARNRLPSAAA 300 AQGLPFPPIH GPAPFQLHPS PTVPQGAMKS TVAEAAQQQL LDELAAAAKA TEAGNSTGAR 360 EILARLNHQL PPFGKPFLRS ASYLKEALLA LAEGRHHHSG SRLNTPLDVA LKLAAYKSFS 420 DLSPVLQFTN FTATQALLDE IASSTASCIH VIDFDLGVGG QWASFLQELA HRRCAGGATM 480 PFVKLSAFVS AASHHPLELR LAKDNISQFA GDLGIPFEFN AISVDAINPA ELISPTGDEV 540 IAVSLPVGCS ARAPPLPAIL RLVKQLGPKV VVAIDHGGDR ADLPFSQHYL NCFQSCVFLL 600 DSLDASGIDA DSASKIEKFL IQPRIEDTVI GRCKSDKPMT WRSAFSAAGF APVPPSILAE 660 AQADCLLKRV QVRGFHVEKR GVGLTLYWQR GELVTVSAWR C

Sequence ? help Back to Top

Protein Sequence Length: 701 aa Download sequence Send to blast

MRAALFGAER NGAADLVGGG KALVEPRSVL DCTRSPSPNN STSTLSSSLG GSAADSAGGV  60
AAVSDNSAAA AKRGAPGEHG GGGGGGKEDW AGGCDLPPIP GGLDMGLVSG DGWDAVLGSA  120
AAAGQDQTFL NWIIGAAGDL DQPGPTLQVH NQPLLDNAGF GFPATDPLGF SLDPHLGGVA  180
SDLSSPGAVS HTSNSGGGSK ASSSFGLFSP ESASLQPTPP PMLFHEGIDT KPPLLAAQPP  240
GLLHQYQHHP PPPASTFFMP LPSFTDHNQQ PPLLQPPPKR HPSMADDLYH ARNRLPSAAA  300
AQGLPFPPIH GPAPFQLHPS PTVPQGAMKS TVAEAAQQQL LDELAAAAKA TEAGNSTGAR  360
EILARLNHQL PPFGKPFLRS ASYLKEALLA LAEGRHHHSG SRLNTPLDVA LKLAAYKSFS  420
DLSPVLQFTN FTATQALLDE IASSTASCIH VIDFDLGVGG QWASFLQELA HRRCAGGATM  480
PFVKLSAFVS AASHHPLELR LAKDNISQFA GDLGIPFEFN AISVDAINPA ELISPTGDEV  540
IAVSLPVGCS ARAPPLPAIL RLVKQLGPKV VVAIDHGGDR ADLPFSQHYL NCFQSCVFLL  600
DSLDASGIDA DSASKIEKFL IQPRIEDTVI GRCKSDKPMT WRSAFSAAGF APVPPSILAE  660
AQADCLLKRV QVRGFHVEKR GVGLTLYWQR GELVTVSAWR C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-20	348	699	27	378	Protein SCARECROW
5b3h_A	2e-20	348	699	26	377	Protein SCARECROW
5b3h_D	2e-20	348	699	26	377	Protein SCARECROW
5hyz_A	2e-20	416	700	80	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022682654.1	0.0	scarecrow-like protein 27
TrEMBL	A0A368PPT9	0.0	A0A368PPT9_SETIT; Uncharacterized protein
STRING	Si016508m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2020	37	96