PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Zmw_sc00166.1.g00480.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TCP

Protein Properties

Length: 285aa MW: 30695.4 Da PI: 8.1364

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00166.1.g00480.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	93.5	4.3e-29	43	115	3	71
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa....s 71 g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +a ++i++l+ ++++++ Zmw_sc00166.1.g00480.1.am.mk 43 GGKDRHSKVKTVKGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLSAARHEIDKLPPLQFPPQdlmvG 115 78*************************************************************8888833330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.3E-27	44	105	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.704	44	102	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MISGSNRQAA DEEQARNHAA LASSRQWSAQ TESRIVRVSR VFGGKDRHSK VKTVKGLRDR 60 RVRLSVPTAI QLYDLQDRLG LNQPSKVVDW LLSAARHEID KLPPLQFPPQ DLMVGHLPAP 120 MPLMHEEKFD QLAAAAAALA RERAKAGHGD GAADAEGSGA HNMGRFPNIG YHHFMGLNSS 180 FAMVNSTMAY SNYSGEAWNI NMHENSAAGS PHVAAVAAAA AAGAQHSSLL SLAPGPHQLV 240 FYPSEGDQQF QVDNLAGAQH SSLLSLAPVS HQLVFYPSEG DRSSK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-20	49	103	1	55	Putative transcription factor PCF6
5zkt_B	3e-20	49	103	1	55	Putative transcription factor PCF6
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00008	PBM	Transfer from 496250	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814168.1	1e-116	transcription factor PCF5-like
Refseq	XP_025814169.1	1e-116	transcription factor PCF5-like
TrEMBL	A0A3L6SMS6	1e-118	A0A3L6SMS6_PANMI; Transcription factor PCF5-like
STRING	Pavir.J15913.1.p	1e-116	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2490	35	84