PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00154.1.g00470.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 396aa    MW: 43268.9 Da    PI: 11.3794
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00154.1.g00470.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.21.1e-14169219255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr+++ +g+++AeIr p     k +r++l +++ta e a+a+++a+ +l+g
  Zmw_sc00154.1.g00470.1.am.mk 169 RYRGVRQRP-WGKYAAEIRYP---ArKGARVWLSTYDTAVEVARAYDRAAFRLRG 219
                                   7********.**********8...4445*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.7E-30169233IPR001471AP2/ERF domain
CDDcd000188.24E-25169228No hitNo description
Gene3DG3DSA:3.30.730.106.6E-28169228IPR001471AP2/ERF domain
PfamPF008472.6E-10169219IPR001471AP2/ERF domain
SuperFamilySSF541715.3E-19169228IPR016177DNA-binding domain
PROSITE profilePS5103222.8169227IPR001471AP2/ERF domain
PRINTSPR003671.4E-13170181IPR001471AP2/ERF domain
PRINTSPR003671.4E-13209229IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MEFGKSKITI SSDPSFARRG SQATNAVPVR LVVPQKETVA TVIHRIARGL WCFRPAVDFD  60
PVPQLESLLG SRASRRELGI SMPFRLLHRR RLFAGKGIEY PLSCAAAVPV GWCVGLDRPR  120
PIGTARKRRW AAYFPVLRPV TPGQHAQGAA QARQQQLEQC GYAEDDFRRY RGVRQRPWGK  180
YAAEIRYPAR KGARVWLSTY DTAVEVARAY DRAAFRLRGS KAILNFPNEV AFGAAVRWAP  240
SAAPLTNSYA AAGNKRTRLP EPSLLWETAE CLREVKKERV AAPVEGREAR AQMCLKGRGQ  300
GVDRGTSTRS LMRSIFFSLL GRALPKEPLN RFPCLVFLSP RPHVTASASE DTAAAGTGTE  360
GRAGVMRPAN AAAAKCIAIL PSSALLAATT AFGSSA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-24168233469ATERF1
3gcc_A2e-24168233469ATERF1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465