PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00142.1.g00350.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 207aa MW: 21735.2 Da PI: 7.6272 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 102 | 122 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++Cg+ F ++ L H++ H Zmw_sc00142.1.g00350.1.am.mk 102 CTYCGRKFYSSQALGGHQNAH 122 ******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.23E-7 | 90 | 144 | No hit | No description |
PROSITE profile | PS50157 | 11.78 | 100 | 127 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 102 | 122 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MRTIWARPRR TATARSPAGQ HVDDDDDGAA SARYATAGPT NGGRPLTSPN GAAAGDDPTR 60 QFQSASEIII IVVAALMEVD LELSLLHAAA APEQEPTGFF LCTYCGRKFY SSQALGGHQN 120 AHKYERTLAK RRMEIALAMR AHGAAPGASS RSRADAGVAG GAEEQPGRAR MGAKQADAAI 180 SGLLLGKSSS SEYGVERADE LDLSLRL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004984245.1 | 8e-41 | zinc finger protein STAMENLESS 1 | ||||
TrEMBL | A0A1E5UY86 | 2e-39 | A0A1E5UY86_9POAL; Uncharacterized protein | ||||
TrEMBL | K4AGD0 | 2e-39 | K4AGD0_SETIT; Uncharacterized protein | ||||
STRING | Si037937m | 3e-40 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP183 | 36 | 274 |