PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00136.1.g00260.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 486aa    MW: 54382.1 Da    PI: 10.4218
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00136.1.g00260.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix60.34.8e-19197283286
                      trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtse 74 
                                   W++ e+++Li+a++e++++lrrg+lk+++Weev++ +             +++ +qC++k+e+l+kry+ + ++       
  Zmw_sc00136.1.g00260.1.am.mk 197 WSHVETMHLIDAYEERWTALRRGQLKAHQWEEVAAEVaarcaatpGVNVQHKTGTQCRHKLEKLRKRYRTEGARPVT---- 273
                                   *************************************999996644444488*****************98877764.... PP

                      trihelix  75 ssstcpyfdqle 86 
                                     s +pyf++++
  Zmw_sc00136.1.g00260.1.am.mk 274 --SLWPYFRRMD 283
                                   ..68*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.3E-20195285No hitNo description
SMARTSM005952.0E-5204290IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 486 aa     Download sequence    Send to blast
MWYTGMHRCA AVALAARARP VVSDFPSRAA CRRGRQCVAP GHRLEQRASY GGRHASPTQI  60
ACCGGQAHGI PSEPPLPALV PRSLTTGPCI STWLHESLRR HRNATERRPR RGALATAQRR  120
RGPRGRGPAA SRARAARQPP RARSTHRVXX XXNPHPENSQ RPPPPPPIPR PVQAMAQDAD  180
ESPRRPALKK SAPAQPWSHV ETMHLIDAYE ERWTALRRGQ LKAHQWEEVA AEVAARCAAT  240
PGVNVQHKTG TQCRHKLEKL RKRYRTEGAR PVTSLWPYFR RMDRLERGPG ATSSANPPAA  300
ESPPAGASDE EEVQEEEEEE DEEEEEEELI PRNNNTRSIN GIIREFGSGL APRHPQLQQP  360
PPSITPSTAP PRKRVSYEAF QARAAAAEAE KVKEDEVEMA RRPFRYGGAN AELSAVLRDF  420
SEGFMRLERR RMEVQWEIEQ GWKETEARQT RMLQDAQHGL RDTIAVVCAV PPKKARRDHG  480
SNGDGF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025820374.11e-145uncharacterized protein LOC112896572
TrEMBLA0A0A9FZH61e-145A0A0A9FZH6_ARUDO; Uncharacterized protein
STRINGPavir.J15698.1.p1e-134(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100782933