PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00136.1.g00260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 486aa MW: 54382.1 Da PI: 10.4218 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 60.3 | 4.8e-19 | 197 | 283 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm........rergferspkqCkekwenlnkrykkikegekkrtse 74 W++ e+++Li+a++e++++lrrg+lk+++Weev++ + +++ +qC++k+e+l+kry+ + ++ Zmw_sc00136.1.g00260.1.am.mk 197 WSHVETMHLIDAYEERWTALRRGQLKAHQWEEVAAEVaarcaatpGVNVQHKTGTQCRHKLEKLRKRYRTEGARPVT---- 273 *************************************999996644444488*****************98877764.... PP trihelix 75 ssstcpyfdqle 86 s +pyf++++ Zmw_sc00136.1.g00260.1.am.mk 274 --SLWPYFRRMD 283 ..68*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.3E-20 | 195 | 285 | No hit | No description |
SMART | SM00595 | 2.0E-5 | 204 | 290 | IPR006578 | MADF domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 486 aa Download sequence Send to blast |
MWYTGMHRCA AVALAARARP VVSDFPSRAA CRRGRQCVAP GHRLEQRASY GGRHASPTQI 60 ACCGGQAHGI PSEPPLPALV PRSLTTGPCI STWLHESLRR HRNATERRPR RGALATAQRR 120 RGPRGRGPAA SRARAARQPP RARSTHRVXX XXNPHPENSQ RPPPPPPIPR PVQAMAQDAD 180 ESPRRPALKK SAPAQPWSHV ETMHLIDAYE ERWTALRRGQ LKAHQWEEVA AEVAARCAAT 240 PGVNVQHKTG TQCRHKLEKL RKRYRTEGAR PVTSLWPYFR RMDRLERGPG ATSSANPPAA 300 ESPPAGASDE EEVQEEEEEE DEEEEEEELI PRNNNTRSIN GIIREFGSGL APRHPQLQQP 360 PPSITPSTAP PRKRVSYEAF QARAAAAEAE KVKEDEVEMA RRPFRYGGAN AELSAVLRDF 420 SEGFMRLERR RMEVQWEIEQ GWKETEARQT RMLQDAQHGL RDTIAVVCAV PPKKARRDHG 480 SNGDGF |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025820374.1 | 1e-145 | uncharacterized protein LOC112896572 | ||||
TrEMBL | A0A0A9FZH6 | 1e-145 | A0A0A9FZH6_ARUDO; Uncharacterized protein | ||||
STRING | Pavir.J15698.1.p | 1e-134 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10078 | 29 | 33 |