PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00126.1.g00150.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 254aa MW: 26480.5 Da PI: 7.0793 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00069 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C + F ++ L H++ H Zmw_sc00126.1.g00150.1.sm.mk 78 FKCNYCVRKFYTSQALGGHQNAH 100 89******************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.56E-6 | 75 | 105 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 78 | 105 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MEIEAVVEVE DREEVRGREQ ALAQEMDLLG AVGSEPAANV IQALEAKGKE KAMVEVEEKP 60 VTATVAGSNG GGQKRRAFKC NYCVRKFYTS QALGGHQNAH KRERSLAKSA AAAAAGRGMY 120 DGGDPFMPPQ HLRVPHAWPY YAAGGRPSFL GLGGRGSAVP FSGVHQGWAA HEGQPSVAGV 180 ARHGGADGGQ PSAPHAYGYA ASSTMTPAPT ILDSGMAGLR WTGGVARGST GDHGVAHEVK 240 QEESDGTIDL NLKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022683031.1 | 2e-72 | zinc finger protein 3-like | ||||
TrEMBL | A0A3L6RLA4 | 1e-80 | A0A3L6RLA4_PANMI; Uncharacterized protein | ||||
STRING | Si014969m | 8e-72 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13064 | 22 | 30 |