PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00115.1.g00620.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family M-type_MADS
Protein Properties Length: 417aa    MW: 44259.1 Da    PI: 9.8754
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00115.1.g00620.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF37.53e-125287338
                                  --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEE CS
                        SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevavi 38
                                  i n ++r  tf+kR++g+ KKA EL +LC+++va +
  Zmw_sc00115.1.g00620.1.am.mk 52 IPNRRQRVNTFAKRKEGLKKKAGELATLCGVRVAFV 87
                                  679999***************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.0074287IPR002100Transcription factor, MADS-box
SMARTSM004321.6E-1042102IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-1542102IPR002100Transcription factor, MADS-box
CDDcd002663.27E-1944106No hitNo description
PRINTSPR004047.3E-64464IPR002100Transcription factor, MADS-box
PfamPF003199.0E-135288IPR002100Transcription factor, MADS-box
PRINTSPR004047.3E-66479IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGRGFGDELE EAKPGGSMDA FVPRAWLPGR PSGEAAVEEI KMPRRKISMG LIPNRRQRVN  60
TFAKRKEGLK KKAGELATLC GVRVAFVCGF ADGAGAADVW ESEPGVLDGV PRPPARRARE  120
AHAPRVRRGR AAQGGGEAGQ GXXXAAALAL ALTGATGSTR SRRRARLTPL PCRAGSPLWL  180
LHSLQVMWDG GFDPCSAAVN WHPAGYAIQP CTADIDGAYK LQHMAADMYG NNNNSDSMGR  240
LPWDAFHPPT NAVAGYGFEF TGAGNSYVGG MPSYLTPPVP SNADLPLRYP SLEMRVNYLD  300
TPAAQQQGVG GLSLAGSNFN FIGTLDNFIN APQAQPLALS YHGGLVNAND YASQWPSAGQ  360
LWGAAGSDPG TSRSHVGARL KRAPSERQQP LRFAATTGAV TRRPETLAIY RSPTDTG