PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00113.1.g00180.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

GRAS

Protein Properties

Length: 457aa MW: 48412.1 Da PI: 7.6505

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00113.1.g00180.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	141.7	7.7e-44	154	448	2	288
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykal...ppsetseknsseel 78 ++lL cA av++g+l+++q+l l elas +gd+++Rlaa+ ++AL +rl + ++++ p+ ++ ++ e Zmw_sc00113.1.g00180.1.sm.mk 154 EQLLNPCAAAVEAGNLSRVQHLFYVLGELASFSGDANHRLAAHGLRALLRRLPAaVGVAAAATVrvpPCVCPTPAFVAAEP 234 689***********************************************98322222333311133333333344444 PP GRAS 79 aalkl....fsevsPilkfshltaNqaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgsp 150 +++ f+evsP++ + + +aN aI +a+++ + +H++D+++s+G+QWp+Ll++L+ + + pps+R+T+ g+ Zmw_sc00113.1.g00180.1.sm.mk 235 RLFRAslikFHEVSPWFALPNALANAAIAQAAARGvepRPIHVVDLGVSHGVQWPTLLESLTRLSgtRVPPSVRLTVAGPT 315 444445689******************998778899*****************988755669****996 PP GRAS 151 esg......skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserd 225 ++ + L ++A+++++++ + a +le++ +++ + pgEal+V+l+++l ++ ++er+ Zmw_sc00113.1.g00180.1.sm.mk 316 ATPqvvpfsLSPPGYDFSPHLLRYAKSINLQLAIGR--AASLESV--HSF-TTPGEALVVCLQFHLGHVA------ADERT 385 65578788766677889999*********998..3444444..666.779*********998......55689 PP GRAS 226 evLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvEre 288 ++Lk v++l+P++vv++e +a ++++ + +f+ le+ + +++s++a + ++ +er+ +E+e Zmw_sc00113.1.g00180.1.sm.mk 386 DILKKVRGLNPELVVLSELDAV-GDGTVAGEFAARLEMLWRFLESTSAAFKGKDgDERRLLEAE 448 9************99975.6999*****************888877776888888865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	27.797	127	457	IPR005202	Transcription factor GRAS
Pfam	PF03514	2.7E-41	154	448	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 457 aa Download sequence Send to blast
MHASSCKLVY MKAMNCREQE HQELAATTSN NGLDWLDDSI SFLTADIDFG GWWDTTPAEA 60 QQDDISSVVA QTLSPPAPLA TTSAPLAQAS SSTASPAVSS PSEPSSKKRK SPVHRASGQG 120 GSNQRRRAEQ DRAGGKKGGA KGGAGSDRDM RWAEQLLNPC AAAVEAGNLS RVQHLFYVLG 180 ELASFSGDAN HRLAAHGLRA LLRRLPAAVG VAAAATVRVP PCVCPTPAFV AAEPRLFRAS 240 LIKFHEVSPW FALPNALANA AIAQAAARGV EPRPIHVVDL GVSHGVQWPT LLESLTRLSG 300 TRVPPSVRLT VAGPTATPQV VPFSLSPPGY DFSPHLLRYA KSINLQLAIG RAASLESVHS 360 FTTPGEALVV CLQFHLGHVA ADERTDILKK VRGLNPELVV LSELDAVGDG TVAGEFAARL 420 EMLWRFLEST SAAFKGKDGD ERRLLEAEAG XXXGQTS

Sequence ? help Back to Top

Protein Sequence Length: 457 aa Download sequence Send to blast

MHASSCKLVY MKAMNCREQE HQELAATTSN NGLDWLDDSI SFLTADIDFG GWWDTTPAEA  60
QQDDISSVVA QTLSPPAPLA TTSAPLAQAS SSTASPAVSS PSEPSSKKRK SPVHRASGQG  120
GSNQRRRAEQ DRAGGKKGGA KGGAGSDRDM RWAEQLLNPC AAAVEAGNLS RVQHLFYVLG  180
ELASFSGDAN HRLAAHGLRA LLRRLPAAVG VAAAATVRVP PCVCPTPAFV AAEPRLFRAS  240
LIKFHEVSPW FALPNALANA AIAQAAARGV EPRPIHVVDL GVSHGVQWPT LLESLTRLSG  300
TRVPPSVRLT VAGPTATPQV VPFSLSPPGY DFSPHLLRYA KSINLQLAIG RAASLESVHS  360
FTTPGEALVV CLQFHLGHVA ADERTDILKK VRGLNPELVV LSELDAVGDG TVAGEFAARL  420
EMLWRFLEST SAAFKGKDGD ERRLLEAEAG XXXGQTS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_B	5e-16	151	450	31	334	Protein SHORT-ROOT
5b3h_E	5e-16	151	450	31	334	Protein SHORT-ROOT
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021318969.1	0.0	nodulation-signaling pathway 1 protein
TrEMBL	A0A3L6TEV8	0.0	A0A3L6TEV8_PANMI; Uncharacterized protein
STRING	Si040237m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6135	28	54