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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Zmw_sc00111.1.g00020.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family |
AP2 |
Protein Properties |
Length: 407aa MW: 44094.4 Da PI: 6.6455 |
Description |
AP2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Zmw_sc00111.1.g00020.1 | genome | ZGD | - |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 34.4 | 5.5e-11 | 108 | 149 | 1 | 47 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaai 47
s+y+GV++++++grW+++I+d + k+++lg + +A + ai
Zmw_sc00111.1.g00020.1.sm.mkhc 108 SQYRGVTFYRRTGRWESHIWD------CgKQIYLGELAFLVDAFADAI 149
78*******************......55*******999888876665 PP
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2 | AP2 | 44.3 | 4.5e-14 | 219 | 269 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55
s+y+GV+ +k grW+A+ g +k+++lg f+t+ eAa+a+++a+ +++g
Zmw_sc00111.1.g00020.1.sm.mkhc 219 SKYRGVTLHK-GGRWEAR---M---GqllGTKYIYLGLFDTEIEAARAYDRAAIRFNG 269
89********.9******...5...334336**********99**********99987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 407 aa
Download sequence Send
to blast |
MVLDLNAESP GDGGEAASPA SSSADAGGGF FRFDLLGGSP DGEGFSSPPV VTRQLFPSPH 60 PGVVVLDGSP PPSTEMVTGP WTRGVAAVPA PVPSPGKKSR RGPRSRSSQY RGVTFYRRTG 120 RWESHIWDCG KQIYLGELAF LVDAFADAIF ALLLGGFDTA HEAARAYDRA AIKFRGLDAD 180 INFDLKDYED DLKQMRNWTK EEFVHILRRQ STGFARGSSK YRGVTLHKGG RWEARMGQLL 240 GTKYIYLGLF DTEIEAARAY DRAAIRFNGK DSVTNFDPST YDGDVPPEIE KDVADRDILD 300 LSLRISQPNL HDPRGSGILS GLRSAGESPE ASTVVFPKEA TNRMEEKRPE LVGAPPFSPW 360 AWQMQGSPAP PLPAPAASSG FSTTTGAGMQ YTGPRLFAVG HRFPPTA
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Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes (PubMed:22003982). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (PubMed:17144896). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:17144896, ECO:0000269|PubMed:22003982, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000269|PubMed:20017947, ECO:0000269|PubMed:22003982, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Publications
? help Back to Top |
- Lee DY,An G
Two AP2 family genes, supernumerary bract (SNB) and Osindeterminate spikelet 1 (OsIDS1), synergistically control inflorescence architecture and floral meristem establishment in rice. Plant J., 2012. 69(3): p. 445-61 [PMID:22003982] - Wang L, et al.
Coordinated regulation of vegetative and reproductive branching in rice. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(50): p. 15504-9 [PMID:26631749] - Dai Z,Wang J,Zhu M,Miao X,Shi Z
OsMADS1 Represses microRNA172 in Elongation of Palea/Lemma Development in Rice. Front Plant Sci, 2016. 7: p. 1891 [PMID:28066457]
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