PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zmw_sc00105.1.g00270.1

Organism

Zoysia matrella

Taxonomic ID

38722

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Nin-like

Protein Properties

Length: 555aa MW: 62248.9 Da PI: 4.7642

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zmw_sc00105.1.g00270.1	genome	ZGD	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.1	7.1e-28	438	488	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sledl+k+F++++k+AAk+L vc+T+LKriCRq+GI+RWP+Rkik++ Zmw_sc00105.1.g00270.1.sm.mkhc 438 EKTVSLEDLRKHFAGSLKEAAKNLRVCPTTLKRICRQHGINRWPSRKIKKV 488 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	15.903	427	508	IPR003035	RWP-RK domain
Pfam	PF02042	8.2E-26	440	488	IPR003035	RWP-RK domain
SMART	SM00666	9.7E-6	480	552	IPR000270	PB1 domain
PROSITE profile	PS51745	15.296	480	555	IPR000270	PB1 domain
SuperFamily	SSF54277	8.18E-14	497	552	No hit	No description
Gene3D	G3DSA:3.10.20.240	4.3E-14	498	553	No hit	No description
Pfam	PF00564	1.8E-10	499	551	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 555 aa Download sequence Send to blast
MEQKEEDGFL GCGTRMEEEI VVGDMDLMEE LFLAAPGFDF SDFPNPGAGA SPAAAAAFSP 60 LFDICSTTTT ATPPPAQAGE DDREEPAEKA DREGANTPLR PWLFQPRQQE VEATVKERLR 120 RALERIASLS QSQPGELLAQ VWVPTVIGDR QVLTTCGQPF WLDRRNERLA SYRTVSMKYQ 180 FSADESSRAE LGLPGRVFVG RVPEWTPDVR YFSTEEYPRV RHAQHFDIRG SVALPIFEPC 240 TRACLGVVEL VMTTQKINYN AEIENICSAL KEVDLRSTDG SSDPFAKQTC YTLRAVSLKE 300 LVDEGSIETN LPTQQEFYDN SVHENLGELC SGVDVPARTT SLENSEEVSS WIASLVDAQH 360 KGVKEIDGDL PFGFTKHEDE GFSVTAGWNT SPVLGPEDSI FSGFKHHEEY EVKEANCSSP 420 PNTSNLEKTV EKRRTKTEKT VSLEDLRKHF AGSLKEAAKN LRVCPTTLKR ICRQHGINRW 480 PSRKIKKVGH SLKKLQMPSW GFDKLKEEIL RRFSIAKENY VDLKYLDDES EWVLLTCDAD 540 LLECIDVYKS SSAQT

Sequence ? help Back to Top

Protein Sequence Length: 555 aa Download sequence Send to blast

MEQKEEDGFL GCGTRMEEEI VVGDMDLMEE LFLAAPGFDF SDFPNPGAGA SPAAAAAFSP  60
LFDICSTTTT ATPPPAQAGE DDREEPAEKA DREGANTPLR PWLFQPRQQE VEATVKERLR  120
RALERIASLS QSQPGELLAQ VWVPTVIGDR QVLTTCGQPF WLDRRNERLA SYRTVSMKYQ  180
FSADESSRAE LGLPGRVFVG RVPEWTPDVR YFSTEEYPRV RHAQHFDIRG SVALPIFEPC  240
TRACLGVVEL VMTTQKINYN AEIENICSAL KEVDLRSTDG SSDPFAKQTC YTLRAVSLKE  300
LVDEGSIETN LPTQQEFYDN SVHENLGELC SGVDVPARTT SLENSEEVSS WIASLVDAQH  360
KGVKEIDGDL PFGFTKHEDE GFSVTAGWNT SPVLGPEDSI FSGFKHHEEY EVKEANCSSP  420
PNTSNLEKTV EKRRTKTEKT VSLEDLRKHF AGSLKEAAKN LRVCPTTLKR ICRQHGINRW  480
PSRKIKKVGH SLKKLQMPSW GFDKLKEEIL RRFSIAKENY VDLKYLDDES EWVLLTCDAD  540
LLECIDVYKS SSAQT

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025797092.1	1e-140	protein NLP1-like
Swissprot	Q10S83	1e-134	NLP1_ORYSJ; Protein NLP1
TrEMBL	A0A3L6TQF2	1e-140	A0A3L6TQF2_PANMI; Protein NLP1-like isoform X2
STRING	Sb01g048290.1	1e-139	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11025	32	41

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]