PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00100.1.g00200.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family C3H
Protein Properties Length: 749aa    MW: 80521.6 Da    PI: 6.8499
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00100.1.g00200.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.63.7e-07309329526
                                   --SGGGGTS--TTTTT-SS-SS CS
                       zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                                   +C++f++ G C++Gd C +aHg
  Zmw_sc00100.1.g00200.1.sm.mk 309 PCPDFRK-GVCRRGDMCEYAHG 329
                                   8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.202.3E-1848170IPR020683Ankyrin repeat-containing domain
CDDcd002046.17E-1050169No hitNo description
PROSITE profilePS5029717.13191166IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484036.53E-1691169IPR020683Ankyrin repeat-containing domain
SMARTSM002480.191121IPR002110Ankyrin repeat
PfamPF127966.7E-1191160IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008813.01126161IPR002110Ankyrin repeat
SMARTSM002480.0039126158IPR002110Ankyrin repeat
PRINTSPR014153.6E-5127142IPR002110Ankyrin repeat
PRINTSPR014153.6E-5145159IPR002110Ankyrin repeat
SMARTSM003561.1E-5304330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4308331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375309331IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4309329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.2E-4337367IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.052339363IPR000571Zinc finger, CCCH-type
SMARTSM0035625339362IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MTNSMPISSS PAASFDGGAE TVAAPRKNTA AANPVSERVK HLTIDTDDAF TSLLELAADD  60
DAEGLRRALE RAPPAAADEA GLWYGRRKVL EHRTPLMVAA TYGSLAALRL LLSLPSVDVN  120
NRCSPDGTTA LHCAAYGGSR TAVEAVKLLL AAGADPDAKD DSGRRPADVI SVPPKMFDAK  180
FALQDLLGCP KSEHGVLRVV TRSTNSISSP VSSPTAEDAQ SPSAALMMTT KFADLPRVAT  240
SEKKEYPVDP SLPDIKNSIY ASDEFRMYSF KIRPCSRAYS HDWTECPFVH PGENARRRDP  300
RKYHYSCVPC PDFRKGVCRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTN CNRRVCFFAH  360
TTDELRPLYV STGSAVPSPR ASATAAMEMA AAMGMMPGSP SSASAVMSPF TPPMSPSGNG  420
MPSSLGWQQP NVPTLHLPGS GLQSSRLRTS LSARDMPADD YSLMQDPDSQ LMNDHFSRLG  480
PSAGNHSART KSLNPSNLDD LFSAEMVSSP RYNNTDQGAM FSPSHKAAIL NQFQQQQQAL  540
LSPINTGVFS PKAVDNQQVP SHSSLLQASL GLSSPGRMSP RCAESGSPMN SLLAAALIQR  600
EKQQQQQTMR SLSSRDLGPS AARSSALVGT PLSSSWSRWG SPSGTPDWVI DGEELVKLRR  660
SSSFELRSGG DDPDLSWVHT LVKESPPEKQ VTIAETMNCV GPSPIMPPSM NNGEVSGLNT  720
QLDGHDQAAV IGALLEQMQL DQKIGSLAT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794600.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLA0A2T7C2E70.0A0A2T7C2E7_9POAL; Uncharacterized protein
STRINGPavir.Ib04422.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]