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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00100.1.g00200.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C3H | ||||||||
Protein Properties | Length: 749aa MW: 80521.6 Da PI: 6.8499 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 21.6 | 3.7e-07 | 309 | 329 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Zmw_sc00100.1.g00200.1.sm.mk 309 PCPDFRK-GVCRRGDMCEYAHG 329 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.25.40.20 | 2.3E-18 | 48 | 170 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 6.17E-10 | 50 | 169 | No hit | No description |
PROSITE profile | PS50297 | 17.131 | 91 | 166 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 6.53E-16 | 91 | 169 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.1 | 91 | 121 | IPR002110 | Ankyrin repeat |
Pfam | PF12796 | 6.7E-11 | 91 | 160 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50088 | 13.01 | 126 | 161 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0039 | 126 | 158 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 3.6E-5 | 127 | 142 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 3.6E-5 | 145 | 159 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 1.1E-5 | 304 | 330 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.4E-4 | 308 | 331 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.375 | 309 | 331 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.1E-4 | 309 | 329 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-4 | 337 | 367 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.052 | 339 | 363 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 25 | 339 | 362 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 749 aa Download sequence Send to blast |
MTNSMPISSS PAASFDGGAE TVAAPRKNTA AANPVSERVK HLTIDTDDAF TSLLELAADD 60 DAEGLRRALE RAPPAAADEA GLWYGRRKVL EHRTPLMVAA TYGSLAALRL LLSLPSVDVN 120 NRCSPDGTTA LHCAAYGGSR TAVEAVKLLL AAGADPDAKD DSGRRPADVI SVPPKMFDAK 180 FALQDLLGCP KSEHGVLRVV TRSTNSISSP VSSPTAEDAQ SPSAALMMTT KFADLPRVAT 240 SEKKEYPVDP SLPDIKNSIY ASDEFRMYSF KIRPCSRAYS HDWTECPFVH PGENARRRDP 300 RKYHYSCVPC PDFRKGVCRR GDMCEYAHGV FECWLHPAQY RTRLCKDGTN CNRRVCFFAH 360 TTDELRPLYV STGSAVPSPR ASATAAMEMA AAMGMMPGSP SSASAVMSPF TPPMSPSGNG 420 MPSSLGWQQP NVPTLHLPGS GLQSSRLRTS LSARDMPADD YSLMQDPDSQ LMNDHFSRLG 480 PSAGNHSART KSLNPSNLDD LFSAEMVSSP RYNNTDQGAM FSPSHKAAIL NQFQQQQQAL 540 LSPINTGVFS PKAVDNQQVP SHSSLLQASL GLSSPGRMSP RCAESGSPMN SLLAAALIQR 600 EKQQQQQTMR SLSSRDLGPS AARSSALVGT PLSSSWSRWG SPSGTPDWVI DGEELVKLRR 660 SSSFELRSGG DDPDLSWVHT LVKESPPEKQ VTIAETMNCV GPSPIMPPSM NNGEVSGLNT 720 QLDGHDQAAV IGALLEQMQL DQKIGSLAT |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025794600.1 | 0.0 | zinc finger CCCH domain-containing protein 24 | ||||
Swissprot | Q10EL1 | 0.0 | C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24 | ||||
TrEMBL | A0A2T7C2E7 | 0.0 | A0A2T7C2E7_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ib04422.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP823 | 37 | 126 |
Publications ? help Back to Top | |||
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