PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zmw_sc00094.1.g00550.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | bHLH | ||||||||
Protein Properties | Length: 362aa MW: 39061.2 Da PI: 6.649 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 47.2 | 4e-15 | 172 | 218 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR++iN++f eL +++P + kK++Ka+iL A++Y+k+Lq Zmw_sc00094.1.g00550.1.sm.mk 172 DHIMAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRYVKELQ 218 699************************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.025 | 168 | 217 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.46E-18 | 172 | 239 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.9E-19 | 172 | 227 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.3E-12 | 172 | 218 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.49E-16 | 173 | 222 | No hit | No description |
SMART | SM00353 | 2.3E-16 | 174 | 223 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MEDSSNFMQW AMTTLHHEHH QQAVVVDGDR GEATFPSLHA LREASQVAEM VQELIAETHS 60 TNSWSSGDGE TATDGSRVGN NSNLPPAEVD HDVWPASPNS AVRQRSCGVT NPPVSPVSWN 120 FSAAAAQPQP GGDGVLVETA ARGLPDLAYG SPPARSARLK SSGSMGSPYA QDHIMAERKR 180 REKINQRFIE LSTVIPGLKK MDKATILSDA TRYVKELQEK LKDLEAGGGR STETVAVLKR 240 PCLHAAATPD GDGFPLSASS GTAAVSKQLP EIEAQFWEKS VMVRIHCENG KAVAVKVLAV 300 IEELHLGIVH ANVMPFSACT LIITITAKAR RKKSLPFTFD ESALIKIAFL KNISMEFLCT 360 ES |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 176 | 181 | ERKRRE |
2 | 177 | 182 | RKRREK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004982204.1 | 1e-136 | transcription factor bHLH18 | ||||
TrEMBL | A0A0A9D0A7 | 1e-145 | A0A0A9D0A7_ARUDO; Uncharacterized protein | ||||
STRING | GRMZM2G120021_P01 | 1e-135 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP927 | 31 | 143 |