PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00094.1.g00050.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 281aa    MW: 29860.3 Da    PI: 4.972
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00094.1.g00050.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.61.3e-16182218135
                            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                     C+nCgt++  Tp +Rrgp g++tLCnaCGl+++ k++
  Zmw_sc00094.1.g00050.1.am.mkhc 182 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKRT 218
                                     *********************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132011.2670105IPR010399Tify domain
PfamPF062003.9E-77495IPR010399Tify domain
PfamPF062031.0E-14110150IPR010402CCT domain
PROSITE profilePS5101713.295110152IPR010402CCT domain
SMARTSM004016.0E-9176229IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.99E-10180226No hitNo description
Gene3DG3DSA:3.30.50.102.0E-13181220IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.51E-14181235No hitNo description
PfamPF003203.8E-14182218IPR000679Zinc finger, GATA-type
PROSITE patternPS003440182209IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
SPQPPAMSDA AAARDADAEM RDAAASTGAP PGDEGESDTE DDDDDDVDDE EPPAPAPAQG  60
ASAPEPVSAM TADPNQLTML FQGEVYVFDS VAPDKGYDDI LRRTDIPAKR VASLIRFREK  120
RKDRNFDKKI RYAVRKEVAL RMQRQKGQFA GRANLEGESS ATGCDPASRV SGQDFPCRES  180
KCQNCGTSEK MTPAMRRGPA GPRTLCNACG LMWANKRTLR SCPKAKVKSP MIASNLAVSQ  240
SGSDNKAPLI PKNDYVAASD GGVRGNCVPA GAADIEGPKA L
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015628049.11e-108GATA transcription factor 18
SwissprotQ10F251e-109GAT18_ORYSJ; GATA transcription factor 18
TrEMBLA0A0D9ZBQ01e-107A0A0D9ZBQ0_9ORYZ; Uncharacterized protein
STRINGOGLUM03G30120.11e-108(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34603773
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]