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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Zmw_sc00075.1.g00030.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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| Family |
C3H |
| Protein Properties |
Length: 164aa MW: 18519.5 Da PI: 8.7805 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zmw_sc00075.1.g00030.1 | genome | ZGD | - |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 36.3 | 9.6e-12 | 48 | 71 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
++ C++++rtG C++G +CkF+H+
Zmw_sc00075.1.g00030.1.sm.mkhc 48 EPDCSYYMRTGLCRFGMTCKFNHP 71
789********************9 PP
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| 2 | zf-CCCH | 41.1 | 3e-13 | 93 | 117 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27
+++C+++++tGtCk+G++CkF+H++
Zmw_sc00075.1.g00030.1.sm.mkhc 93 QPECQYYLKTGTCKFGATCKFHHPR 117
589********************96 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 13.366 | 45 | 73 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 6.0E-5 | 45 | 72 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 3.7E-9 | 48 | 71 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.79E-6 | 50 | 73 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-4 | 51 | 71 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 15.939 | 90 | 118 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.4E-6 | 90 | 117 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.66E-7 | 92 | 119 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.3E-10 | 94 | 117 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 1.6E-5 | 96 | 118 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 8.155 | 136 | 157 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 29 | 136 | 160 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF14608 | 2.8 | 150 | 157 | No hit | No description |
| Sequence ? help Back to Top |
| Protein Sequence Length: 164 aa
Download sequence Send
to blast |
MVVVLEVTTG RTPVNVTLLP GTKVAEAMWQ MNLGEAAESG PYPERVGEPD CSYYMRTGLC 60
RFGMTCKFNH PLDRKLAVAA ARMKGEYPQR TSQPECQYYL KTGTCKFGAT CKFHHPREKA 120
GMANRVQWNS LGYPLRPNEK ECAYYIRTGQ CKFGMTCSDW LVVL
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