PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc00068.1.g00060.1
Organism
Zoysia matrella
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 324aa    MW: 34212.2 Da    PI: 9.9035
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc00068.1.g00060.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.4e-30245303259
                                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                      D ++WrKYGqK++kgs +pr+YY+C++  gCp++k+ver+  dp+++++tYegeH+h+
  Zmw_sc00068.1.g00060.1.sm.mkhc 245 ADDHSWRKYGQKPIKGSSYPRGYYKCSTVrGCPARKHVERDPADPSMLIVTYEGEHRHS 303
                                     599***********************9888****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.2E-19191242IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.3E-31232303IPR003657WRKY domain
PROSITE profilePS5081128.598239305IPR003657WRKY domain
SuperFamilySSF1182902.88E-25242303IPR003657WRKY domain
SMARTSM007741.4E-35244304IPR003657WRKY domain
PfamPF031061.0E-25246302IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MITLDLMGGY GRAEEQAAIQ EAAAAGLRGV EHLISQLSRS GTGESDSSSS PATRQLNQEE  60
EEAEKQKQKQ VDCREVADMT VSKFKKVVSM LNRTGHARFR RGPVVAQSEG PAAEVAEPAP  120
ARSAPALTLD FTAKAAASGL GNSNAAAGLS LSVASSSFLS LSTTSVTGDG SVSNGCAAAR  180
RPVSSSGAAR KRRCHDHAHS ENGNLAGGRF GSTGGRCHCS KRRKHRVKRT IRVPAISEKV  240
ADIPADDHSW RKYGQKPIKG SSYPRGYYKC STVRGCPARK HVERDPADPS MLIVTYEGEH  300
RHSPGAGAAD ASPPLAPLPE LPNH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-19232302271WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts, when in complex with WRKY71, specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Represses specifically gibberellic acid (GA)-induced promoters in aleurone cells, probably by interfering with GAM1. {ECO:0000269|PubMed:16623886}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells (PubMed:15618416, PubMed:16623886). Accumulates in response to uniconazole, a gibberellic acid (GA) biosynthesis inhibitor (PubMed:16623886). Repressed by GA (PubMed:15618416). {ECO:0000269|PubMed:15618416, ECO:0000269|PubMed:16623886}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975218.11e-137WRKY transcription factor WRKY51
SwissprotQ0JEE21e-131WRK51_ORYSJ; WRKY transcription factor WRKY51
TrEMBLA0A3L6QBB21e-141A0A3L6QBB2_PANMI; Putative WRKY transcription factor 17
STRINGSi012025m1e-136(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61738171
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang Y,Wang L
    The WRKY transcription factor superfamily: its origin in eukaryotes and expansion in plants.
    BMC Evol. Biol., 2005. 5: p. 1
    [PMID:15629062]
  3. Wu KL,Guo ZJ,Wang HH,Li J
    The WRKY family of transcription factors in rice and Arabidopsis and their origins.
    DNA Res., 2005. 12(1): p. 9-26
    [PMID:16106749]
  4. Xie Z, et al.
    Interactions of two abscisic-acid induced WRKY genes in repressing gibberellin signaling in aleurone cells.
    Plant J., 2006. 46(2): p. 231-42
    [PMID:16623886]
  5. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  6. Zhang ZL, et al.
    A negative regulator encoded by a rice WRKY gene represses both abscisic acid and gibberellins signaling in aleurone cells.
    Plant Mol. Biol., 2009. 70(1-2): p. 139-51
    [PMID:19199048]
  7. Hwang SH, et al.
    OsWRKY51, a rice transcription factor, functions as a positive regulator in defense response against Xanthomonas oryzae pv. oryzae.
    Plant Cell Rep., 2016. 35(9): p. 1975-85
    [PMID:27300023]